Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2809g00003 ATGTCCTTTTTCTCCAGGCTGTGCCCCTGTTTCTGCAAGGGAGCCGCAACCTCCGGCGACGGCGGCGACCAACACGACGATCACAGCGGGCCGGCGGACTCCTTGGACCTGATTTTCGACCTCCACACTCTCCAACTCGCTACCAACTTCTTCAGCAGCCTCAACCAGCTAGGTCATGGAAGCTTTGGCCCTGTCTTCAAGGGAATGATGCCAAATGGTCAAGAAGTGGCGGTTAAGAAGCTGTCATTGGAATCTAGGCAAGGAGTTAAAGAATTCACCAACGAAGTCAGGCTATTACTCAGAATTCAGCACAAGAACTTGGTTACATTACTTGGTTGTTGTGCAGAAGGGCCTGAAAAGATGCTTGTCTATGAGTATCTACCTAACAAAAGTCTTGATCACTTTCTGTTTGATAAGAGGAAGTCTTCATCTTTGGACTGGGCAAAACGATTCAGAATAGTTACTGGTGTGGCAAGAGGACTTCTCTACCTGCATGAAGAGGCACCAGAAAGAATTATACACAGGGACATTAAAGCTAGTAACATATTGTTGGATGACAAGTTAATTCCGAAAATTTCAGACTTTGGTTTGGCAAGGTTGTTTCCTGGGGAGGACACTCACGTACAGACATTTAAGATTTCCGGTACACATGGTTACATGGCTCCTGAATATGCATTGCGAGGATATCTGTCAGTGAAGACGGATGTTTTCAGTTATGGAGTCCTGGTGTTGGAAATAGTTAGTGGGAGAAAAAACCAAGATATGCGACTTGGACCAGAAAAAGCAGATCTCTTGAGCTATGCATGGTCGCTTTATCAAGGAGGGAGAATAATGGAATTGATTGATCCAACCCTCGGCAAATACAATGGTGATGAGGCAGCAATGTGCATTCAGCTAGGTTTGTTGTGCTGCCAAGCAAGCATAATTGAAAGACCTGACATGAATGCTGTTCATCTCATGATCTCAAGTGATTCCTTCACTTTGCCAAGACCAGGTAAACCTGGAATTCAAGGTCGTACAGGACGTTGGACCACAACTACATCTGCTTTGACCAATACCAATGCTAGTAACACTACCAGGGTCTCAGGTGGTAGTGGTAGTTTTGTAGAGGATTATTCTAGAAATTCTATATCTACCTCTTCTTTTGATGAAGGCAGATGA 1161 0.4479 MSFFSRLCPCFCKGAATSGDGGDQHDDHSGPADSLDLIFDLHTLQLATNFFSSLNQLGHGSFGPVFKGMMPNGQEVAVKKLSLESRQGVKEFTNEVRLLLRIQHKNLVTLLGCCAEGPEKMLVYEYLPNKSLDHFLFDKRKSSSLDWAKRFRIVTGVARGLLYLHEEAPERIIHRDIKASNILLDDKLIPKISDFGLARLFPGEDTHVQTFKISGTHGYMAPEYALRGYLSVKTDVFSYGVLVLEIVSGRKNQDMRLGPEKADLLSYAWSLYQGGRIMELIDPTLGKYNGDEAAMCIQLGLLCCQASIIERPDMNAVHLMISSDSFTLPRPGKPGIQGRTGRWTTTTSALTNTNASNTTRVSGGSGSFVEDYSRNSISTSSFDEGR 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2809g00003 386 ProSiteProfiles Protein kinase domain profile. 51 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2809g00003 386 Gene3D Transferase(Phosphotransferase) domain 1 127 327 - -
Vium2809g00003 386 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 36 357 - -
Vium2809g00003 386 Gene3D Phosphorylase Kinase; domain 1 24 126 - -
Vium2809g00003 386 FunFam Cysteine-rich receptor-like protein kinase 41 127 327 - -
Vium2809g00003 386 SMART serkin_6 51 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2809g00003 386 CDD STKc_IRAK 57 317 - -
Vium2809g00003 386 SUPERFAMILY Protein kinase-like (PK-like) 36 320 IPR011009 -
Vium2809g00003 386 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 30 126 - -
Vium2809g00003 386 Pfam Protein tyrosine and serine/threonine kinase 54 252 IPR001245 GO:0004672|GO:0006468
Vium2809g00003 386 ProSitePatterns Serine/Threonine protein kinases active-site signature. 172 184 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2809g00003 Vium-Chr2809 16636 20246 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2809g00003 37 338 Receptor kinase-like Gene Family AT4G11490 50.658 9.61e-109 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium2809g00003 PK_Tyr_Ser-Thr 6.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2809g00003 - - gmx:100790304 664.84