Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2804g00024 ATGGCTGGGATTTGCTGTAGAGTTGTTGGAGAAGGTGACACCCCTACTCCTCTAGAACCAACCTCTCGTCCTTCCACCCGCAGAACTATGGATATCGTACCCTTGAAGTACATAGCTGACATGGCTGTGCCCGACTCTTCCCGAAAGCGCCCCAAGCTCGATCTCAATGACACTGATAACCAACTTCAAACTGACCGGGAATCCTCCGGAACCAAGGTTATGAAGAAGGATTCCCAATTCCTCAACAACGAACAAGACGACGATGATGTTTCAGACACTAAATCCCTGACAGACGAGGATGACGACTCCGAAGATGAAGAGTGTCCCAAGTATGGAGTCACCTCTGTCTGTGGCAGGAGGAGAGACATGGAGGACTCCGTTTCCCTGCGCCCTTTCTTCTCGCTTGAAGGCTTCCACTACTTTGGCGTTTTTGACGGTCACGGTTGCTCTCATGTTGCCACTATGTGCAAGGAGAGGCTCCACGAGATTGTGAACGAAGAGATTCTGGATGGAGACGACGCTATACAGTGGGGAACAATGATGCAGAGCAGTTTTGCTCGCATGGATGAAGAGGTTTTCCGCCGCAGCCAGAGCAACCAGACTTTCAACTGTCGATGCGAGCTCCAGACTCCGCACTGTGACGCAGTTGGATCCACTGCTATCATCGCCATCCTCACCCCAGACAAGATTGTCGTTTCCAACTGCGGCGACTCCCGTGCTGTTCTCTGCCGTGGCGGAGTTGCCATTCCTCTCTCTTCGGATCACAAGGATAACCGTTTTTGGATCCGTGTTGTTCAGCCGGACCGCCCCGACGAATTGCTCCGAGTGGAATCCAAGGGCGGGCGCGTGATTTACTGGGACGGCGCAAGAGTGCTGGGTGTGTTGGCCATGTCTCGAGCCATAGGAGACTACTACCTGAAGCCATTCGTGATTTCGGAGCCCGAGGTGACTGTGACTGAGCGAAGTGATGATGATGAGTGTTTGATACTGGCAAGTGATGGACTGTGGGATGTGGTGTCAAATGAAACTGCTTGTGGGGTGGTGAAGATGTGTCTGAAGTCGCAGAAGCCCCCGACTCCTCCGGGCTCTCCTGGTCATGGTTATGTGACGGCAGACGGCTCCGACCGTGGTTGCTCGGATGCCTCAATTCTGTTGACCAAGTTGGCTTTGGCAAGGCACAGTGCCGATAATGTGAGCGTGGTGGTGCTTGATCTGAGGAAGGATCCAGAACAAACATCCACTTCCACTTCCAGCTACGTTAACGAATGA 1269 0.5296 MAGICCRVVGEGDTPTPLEPTSRPSTRRTMDIVPLKYIADMAVPDSSRKRPKLDLNDTDNQLQTDRESSGTKVMKKDSQFLNNEQDDDDVSDTKSLTDEDDDSEDEECPKYGVTSVCGRRRDMEDSVSLRPFFSLEGFHYFGVFDGHGCSHVATMCKERLHEIVNEEILDGDDAIQWGTMMQSSFARMDEEVFRRSQSNQTFNCRCELQTPHCDAVGSTAIIAILTPDKIVVSNCGDSRAVLCRGGVAIPLSSDHKDNRFWIRVVQPDRPDELLRVESKGGRVIYWDGARVLGVLAMSRAIGDYYLKPFVISEPEVTVTERSDDDECLILASDGLWDVVSNETACGVVKMCLKSQKPPTPPGSPGHGYVTADGSDRGCSDASILLTKLALARHSADNVSVVVLDLRKDPEQTSTSTSSYVNE 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2804g00024 422 MobiDBLite consensus disorder prediction 69 90 - -
Vium2804g00024 422 ProSiteProfiles PPM-type phosphatase domain profile. 110 405 IPR001932 -
Vium2804g00024 422 SMART PP2C_4 98 403 IPR001932 -
Vium2804g00024 422 FunFam Protein phosphatase 2C 50 114 413 - -
Vium2804g00024 422 ProSitePatterns PPM-type phosphatase domain signature. 140 148 IPR000222 GO:0043169
Vium2804g00024 422 Gene3D - 105 413 IPR036457 -
Vium2804g00024 422 MobiDBLite consensus disorder prediction 91 107 - -
Vium2804g00024 422 MobiDBLite consensus disorder prediction 9 110 - -
Vium2804g00024 422 SUPERFAMILY PP2C-like 110 406 IPR036457 -
Vium2804g00024 422 CDD PP2Cc 110 405 IPR001932 -
Vium2804g00024 422 MobiDBLite consensus disorder prediction 43 61 - -
Vium2804g00024 422 PANTHER PROTEIN PHOSPHATASE 87 405 IPR015655 GO:0004722|GO:0006470
Vium2804g00024 422 Pfam Protein phosphatase 2C 110 366 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2804g00024 Vium-Chr2804 147134 149332 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2804g00024 109 407 PP2C-type Phosphatase Gene Family AT1G07430 58.232 3.14e-132 386
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2804g00024 K14497 - gmx:100776356 611.298