Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2804g00023 ATGGCTGGGATTTGCTGTAGAGTTGTTGGAGAAGGTGACACCCCTACTCCTCTAGAACCAACCTCTCGTCCTTCCACCCGCAGAACTATGGATATCGTACCCTTGAAGTACATAGCTGACATGGCTGTGCCCGACTCTTCCCGAAAGCGCCCCAAGCTCGATCTCAATGACACTGATAACCAACTTCAAACTGACCGGGAATCCTCCGGAACCAAGGTTATGAAGAAGGATTCCCAATTCCTCAACAACGAACAAGACGACGATGATGTTTCAGACACTAAATCCCTGACAGACGAGGATGACGACTCCGAAGATGAAGAGTGTCCCAAGTATGGAGTCACCTCTGTCTGTGGCAGGAGGAGAGACATGGAGGACTCCGTTTCCCTGCGCCCTTTCTTCTCGCTTGAAGGCTTCCACTACTTTGGCGTTTTTGACGGTCACGGTTGCTCTCATGTTGCCACTATGTGCAAGGAGAGGCTCCACGAGATTGTGAACGAAGAGATTCTGGATGGAGACGACGCTATACAGTGGGGAACAATGATGCAGAGCAGTTTTGCTCGCATGGATGAAGAGGTTTTCCGCCGCAGCCAGAGCAACCAGACTTTCAACTGTCGATGCGAGCTCCAGACTCCGCACTGTGACGCAGTTGGATCCACTGCTATCATCGCCATCCTCACCCCAGACAAGATTGTCGTTTCCAACTGCGGCGACTCCCGTGCTGTTCTCTGCCGTGGCGGAGTTGCCATTCCTCTCTCTTCGGATCACAAGCCGGACCGCCCCGACGAATTGCTCCGAGTGGAATCCAAGGGCGGGCGCGTGATTTACTGGGACGGCGCAAGAGTGCTGGGTGTGTTGGCCATGTCTCGAGCCATAGGAGACTACTACCTGAAGCCATTCGTGATTTCGGAGCCCGAGGTGACTGTGACTGAGCGAAGTGATGATGATGAGTGTTTGATACTGGCAAGTGATGGACTGTGGGATGTGGTGTCAAATGAAACTGCTTGTGGGGTGGTGAAGATGTGTCTGAAGTCGCAGAAGCCCCCGACTCCTCCGGGCTCTCCTGGTCATGGTTATGTGACGGCAGACGGCTCCGACCGTGGTTGCTCGGATGCCTCAATTCTGTTGACCAAGTTGGCTTTGGCAAGGCACAGTGCCGATAATGTGAGCGTGGTGGTGCTTGATCTGAGGAAGGATCCAGAACAAACATCCACTTCCACTTCCAGCTACGTTAACGAATGA 1239 0.5319 MAGICCRVVGEGDTPTPLEPTSRPSTRRTMDIVPLKYIADMAVPDSSRKRPKLDLNDTDNQLQTDRESSGTKVMKKDSQFLNNEQDDDDVSDTKSLTDEDDDSEDEECPKYGVTSVCGRRRDMEDSVSLRPFFSLEGFHYFGVFDGHGCSHVATMCKERLHEIVNEEILDGDDAIQWGTMMQSSFARMDEEVFRRSQSNQTFNCRCELQTPHCDAVGSTAIIAILTPDKIVVSNCGDSRAVLCRGGVAIPLSSDHKPDRPDELLRVESKGGRVIYWDGARVLGVLAMSRAIGDYYLKPFVISEPEVTVTERSDDDECLILASDGLWDVVSNETACGVVKMCLKSQKPPTPPGSPGHGYVTADGSDRGCSDASILLTKLALARHSADNVSVVVLDLRKDPEQTSTSTSSYVNE 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2804g00023 412 MobiDBLite consensus disorder prediction 69 90 - -
Vium2804g00023 412 Gene3D - 105 403 IPR036457 -
Vium2804g00023 412 ProSitePatterns PPM-type phosphatase domain signature. 140 148 IPR000222 GO:0043169
Vium2804g00023 412 PANTHER PROTEIN PHOSPHATASE 87 395 IPR015655 GO:0004722|GO:0006470
Vium2804g00023 412 MobiDBLite consensus disorder prediction 91 107 - -
Vium2804g00023 412 FunFam Probable protein phosphatase 2C 9 104 399 - -
Vium2804g00023 412 Pfam Protein phosphatase 2C 110 356 IPR001932 -
Vium2804g00023 412 MobiDBLite consensus disorder prediction 9 110 - -
Vium2804g00023 412 SUPERFAMILY PP2C-like 110 396 IPR036457 -
Vium2804g00023 412 SMART PP2C_4 98 393 IPR001932 -
Vium2804g00023 412 MobiDBLite consensus disorder prediction 43 61 - -
Vium2804g00023 412 CDD PP2Cc 110 395 IPR001932 -
Vium2804g00023 412 ProSiteProfiles PPM-type phosphatase domain profile. 110 395 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2804g00023 Vium-Chr2804 147134 149333 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2804g00023 109 397 PP2C-type Phosphatase Gene Family AT1G07430 60.063 6.36e-136 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2804g00023 K14497 - gmx:100776356 619.387