Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2804g00012 ATGGAGTTCACCACCAGACACTTCGTTTTGGCAATTATGCTGCTGATGCTATCACGCGCCCCGCACGTGTCCCCCGCCACACCGTGTCCCGCGTGTGGCAACACCACGGTGCCGTTTCCCCTCAGCACCACCTCGACATGCGGCGATCCGCTGTACAAAATTCGGTGCAGCTCCGGCACACTCATCTTCGACACGCTGAACAACTCGTACCCGATCGAGTCCATCGACGCGAAATCGCAGCGCCTTGTGATACGGCCTGCTGCGCTCGTGCAGAACACGTGCGTCTCCACCGATAAGGTGCACCAGGGGATCCAGCTCAACAGCACCCTCCCCTTCAACATCACCAGTTCCAACACCATCGTCTACCTCAACTGTACCCTCACGCTCCTTCAGTCCCCCCTCAACTGCTCCGCAGCTAGCGCCTGCAACGCCTACATCAATGCCACCGCCTCCGCCTCCGCCTGCCAGAGCGGCCTCTGCTGCACCTATCGTACTGGCGGCTCCAGCAACTCCTATATGATTCGCGTAAGAGACTCTGGTTGCAGCGCCTACTCCAGCTTCGTTAACCTCAACACGGCTCAACCTGTGAGCCGCTGGACCGAACCAGGTTTGGAGATTCAGTGGCTCTCGCCCAGAGAAACCGTTTGTGGATCCCAGGAGGATTGCGACTCTGCCACGTCGACTTGTGGGCCCGACGCCTCCTCTACGAGCGGGATCAAGAGGTGCTTCTGTCACGATGGGCTCGTGTGGAACCCCATCCAAGGGGTGTGTGCTAAAAAAATTACATGCCAGAACCCAGACGGTTGTGGGGATTCAACTAATAAAAAGGTCATAATCGCAGGTTCAGTATGTGGGGCTGGAGCAGCAATCATCCTTGCCATCATTGCCTTTCTATTCTACAAACGCCACAAGCGCATCAAAGAAGCACAAGCCCGGTTAGCCAAAGAGCGTGAAGGAATTCTGAATGCCAGTAATGGGGGAAGAGCCGCTAAACTTTTCAGTGGCAAAGAGATAAAGAAAGCCACAAACGACTTCTCCAATGACCGACTTCTTGGTGTCGGGGGCTATGGTGAAGTTTACAAGGGCTTTCTTCAAGATGGTACTGCTGTGGCTGTCAAGTGTGCCAAGCTTGGCAACCCCAAAGGCACTGATCAAGTCCTTAATGAGGTTCGCATATTATGCCAAGTTAACCACCGAAACCTTGTCGGTCTACTTGGTTGCTGCGTGGAACTGGAGCAGCCTATTTTGGTTTATGAGTTCATAGAAAATGGTACCGTTCTTGATCACTTGCAAGGTCAAATTCCTAAGGGCCGTGGTTCGCTTAGTTGGACTCATCGCCTTGAAATTGCACGTCAGACTGCTGAGGGTCTTGCTTATCTTCACTTCATGGCTGTGCCTCCTATCTACCACAGAGATGTCAAGTCTAGCAACATTCTGCTAGATATCAATCTGAATGCCAAGGTTTCAGATTTTGGGTTGTCTAGATTGGCCCAGACAGATATGAGTCATATCTCCACTTGTGCTCAGGGGACCCTTGGGTACCTTGATCCTGAGTATTATAGAAACTTCCAATTGACTGAGAAGAGTGATGTTTACAGTTTTGGAGTGGTGCTTCTTGAGCTTTTGACAGCTCAGAAAGCAATAGATTTTAACAGGGCACCAGATGATGTGAACTTGGCAATTTATGTTCATAGAATGATGGAGGAGGAACTGTTGATGGATGTCATTGATCCAGTGTTGAAGAATGTAGCCAACACTATAGAGCTAGAGACTATGAAGGCAGTGGCATTTCTGGCATTGGGCTGCTTGGAGGAAAAGAGACAGAACCGACCTTCAATGAAAGAGGTAGCAGAGGAGATTGAGTATATCATCAGTATTATTACCTCAGCAAAGGTAGTGTAG 1902 0.5079 MEFTTRHFVLAIMLLMLSRAPHVSPATPCPACGNTTVPFPLSTTSTCGDPLYKIRCSSGTLIFDTLNNSYPIESIDAKSQRLVIRPAALVQNTCVSTDKVHQGIQLNSTLPFNITSSNTIVYLNCTLTLLQSPLNCSAASACNAYINATASASACQSGLCCTYRTGGSSNSYMIRVRDSGCSAYSSFVNLNTAQPVSRWTEPGLEIQWLSPRETVCGSQEDCDSATSTCGPDASSTSGIKRCFCHDGLVWNPIQGVCAKKITCQNPDGCGDSTNKKVIIAGSVCGAGAAIILAIIAFLFYKRHKRIKEAQARLAKEREGILNASNGGRAAKLFSGKEIKKATNDFSNDRLLGVGGYGEVYKGFLQDGTAVAVKCAKLGNPKGTDQVLNEVRILCQVNHRNLVGLLGCCVELEQPILVYEFIENGTVLDHLQGQIPKGRGSLSWTHRLEIARQTAEGLAYLHFMAVPPIYHRDVKSSNILLDINLNAKVSDFGLSRLAQTDMSHISTCAQGTLGYLDPEYYRNFQLTEKSDVYSFGVVLLELLTAQKAIDFNRAPDDVNLAIYVHRMMEEELLMDVIDPVLKNVANTIELETMKAVAFLALGCLEEKRQNRPSMKEVAEEIEYIISIITSAKVV 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2804g00012 633 ProSitePatterns Serine/Threonine protein kinases active-site signature. 468 480 IPR008271 GO:0004672|GO:0006468
Vium2804g00012 633 FunFam Wall-associated receptor kinase-like 20 421 632 - -
Vium2804g00012 633 CDD STKc_IRAK 351 617 - -
Vium2804g00012 633 SMART serkin_6 345 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2804g00012 633 Pfam Wall-associated receptor kinase galacturonan-binding 29 84 IPR025287 GO:0030247
Vium2804g00012 633 ProSiteProfiles Protein kinase domain profile. 345 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2804g00012 633 Gene3D Transferase(Phosphotransferase) domain 1 421 630 - -
Vium2804g00012 633 Gene3D Phosphorylase Kinase; domain 1 306 420 - -
Vium2804g00012 633 Pfam Protein tyrosine and serine/threonine kinase 348 619 IPR001245 GO:0004672|GO:0006468
Vium2804g00012 633 FunFam Wall-associated receptor kinase-like 20 307 420 - -
Vium2804g00012 633 ProSitePatterns Protein kinases ATP-binding region signature. 351 373 IPR017441 GO:0005524
Vium2804g00012 633 SUPERFAMILY Protein kinase-like (PK-like) 329 620 IPR011009 -
Vium2804g00012 633 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 18 623 IPR044652 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2804g00012 Vium-Chr2804 87280 90660 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2804g00012 18 628 Receptor kinase-like Gene Family AT5G02070 52.320 0.0 646
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vium2804g00012 PK_Tyr_Ser-Thr 7.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2804g00012 - - gmx:100305415 1093.95