Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2804g00006 ATGGCTCCTCCCTCAGATATCAACCATCTTTCTCACCCTTGCATATACGGGGACTTTGTTTCTTCGTACTCAGAGAGAAAGTCTGGTTTTATGAAATGGTTTGGCAAGATTTTCAAAATTGGGTCAAATAGAGGAAGGGGTGGTGGTCGTCATCTAGAGCAACCTGAAGAGGAAAACATGGCTTGGTCAGCTCCATCTAGATCACGGGATGACCGTGCTAGATCTCGGAAAGAGAAAGAAGATTTGGACCATGCAATTGCACTTTCTTTAGGCGAAAATTTTAAGAGACCAACGGGGTATAGATGGCGAACAGGAGCAAGAATTGATGAAGATTATGCAAAGGCTCTTCAGGATCGCATGTTCTCTTCTGCTCATCCTCCATATGCCCCTGTACCCGCTTATCCCCATGGATATGGCATCGCGTCGCATAGCAGAATATGTGGAGGGTGCAACCAAGAGATTTATGGCGATTGTTTAGGAGTCGGTCACAGTTATTTTCATCCAGACTGCTTTCGGTGTCACTCTTGTCGTTACCCCATTACTGAGCGTGAGTTTTCTTTGTCAGGGAAGTATCCGTACCACAAGTCCTGTTTCAAGGAATTGACCCACCCTAGATGCGAAGTTTGCTATCAATTTATACCAATAAATGCTGCTGGTTTGATTGAGTATAGGTGCCACCCCTATTGGAACCAAAAGTATTGCCCATCTCATGAGCATGACAATACAGCTCGGTGCAGTAGTTGTGAAAGATTGGAGTCTCGGAATGAAAGATACTGTAGATTAGAAGACGGAAGGATTTTGTGCTTTGAGTGCATGGAATCTGCTATAAGCGACACTGGTGAATGTCAGCCTCTTTATCATGCTATCAGAGACTATTACGAAGGAATGAACATGAAAATAGATCAACAAATCCCAATGCTTCTTGTTGAGAGACAAGCACTTAATGATGCCATTGTTGGAGAGAAGAATGGTTTCCATCACCTGCCAGAAACAAGGGGCTTGTGCCTTTCAGAAGAGCAAACTGTCACAAGCGTGCAAAGACGGCCAAGAATTGGAGGTCATAGATTGATAGGGATGAGATCTCAACCTCAAAAGCTGATTAGAAAATGTGAAGTCACAGCTATTCTTGTTCTCTATGGCCTTCCAAGGTTACTCACAGGTGCTATACTTGCCCATGAGCTGATGCATGCTTGGTTACGCCTTAAAGGTTACCATAATCTTAGTCCTGAAGTAGAGGAAGGTATTTGTCAGGTCCTCTCTTACATGTGGCTTGAGGCAGAGGTGATGTCATGTTCTAGAACCATGCCATCAACATCATCAGCTTCTTCTTCCTCCTCCTTCTCCCACTCATCAAAGAAAGGTGCAAAATCTCACGTTGAACATAAATTGGGTGAGTTTTTCATGAACCAGATTGCCAATGATTCTTCCCCAGCTTATGGTGGTGGCTTTAGAGCGGCCAATGAAGCTGTGAATAAATATGGTTTACGTTGCACTCTGGAGCATATTCGTTTGACTGGTAATTTCCCAGTGTGA 1533 0.439 MAPPSDINHLSHPCIYGDFVSSYSERKSGFMKWFGKIFKIGSNRGRGGGRHLEQPEEENMAWSAPSRSRDDRARSRKEKEDLDHAIALSLGENFKRPTGYRWRTGARIDEDYAKALQDRMFSSAHPPYAPVPAYPHGYGIASHSRICGGCNQEIYGDCLGVGHSYFHPDCFRCHSCRYPITEREFSLSGKYPYHKSCFKELTHPRCEVCYQFIPINAAGLIEYRCHPYWNQKYCPSHEHDNTARCSSCERLESRNERYCRLEDGRILCFECMESAISDTGECQPLYHAIRDYYEGMNMKIDQQIPMLLVERQALNDAIVGEKNGFHHLPETRGLCLSEEQTVTSVQRRPRIGGHRLIGMRSQPQKLIRKCEVTAILVLYGLPRLLTGAILAHELMHAWLRLKGYHNLSPEVEEGICQVLSYMWLEAEVMSCSRTMPSTSSASSSSSFSHSSKKGAKSHVEHKLGEFFMNQIANDSSPAYGGGFRAANEAVNKYGLRCTLEHIRLTGNFPV 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2804g00006 510 MobiDBLite consensus disorder prediction 49 80 - -
Vium2804g00006 510 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 143 171 - -
Vium2804g00006 510 Pfam Protein DA1 295 505 IPR022087 -
Vium2804g00006 510 Pfam LIM domain 147 199 IPR001781 -
Vium2804g00006 510 SMART lim_4 146 197 IPR001781 -
Vium2804g00006 510 PANTHER PROTEIN DA1-RELATED 2 33 509 IPR045218 -
Vium2804g00006 510 ProSitePatterns LIM zinc-binding domain signature. 147 180 IPR001781 -
Vium2804g00006 510 CDD LIM_DA1 147 198 - -
Vium2804g00006 510 Gene3D Cysteine Rich Protein 141 204 - -
Vium2804g00006 510 ProSiteProfiles LIM domain profile. 145 204 IPR001781 -
Vium2804g00006 510 MobiDBLite consensus disorder prediction 44 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2804g00006 Vium-Chr2804 45567 50863 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium2804g00006 DA1-like 5.1e-100 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2804g00006 - - gmx:100798829 924.465