Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2804g00005 ATGGCTCCTCCCTCAGATATCAACCATCTTTCTCACCCTTGCATATACGCAGGGGACTTTGTTTCTTCGTACTCAGAGAGAAAGTCTGGTTTTATGAAATGGTTTGGCAAGATTTTCAAAATTGGGTCAAATAGAGGAAGGGGTGGTGGTCGTCATCTAGAGCAACCTGAAGAGGAAAACATGGCTTGGTCAGCTCCATCTAGATCACGGGATGACCGTGCTAGATCTCGGAAAGAGAAAGAAGATTTGGACCATGCAATTGCACTTTCTTTAGGCGAAAATTTTAAGAGACCAACGGGGTATAGATGGCGAACAGGAGCAAGAATTGATGAAGATTATGCAAAGGCTCTTCAGGATCGCATGTTCTCTTCTGCTCATCCTCCATATGCCCCTGTACCCGCTTATCCCCATGGATATGGCATCGCGTCGCATAGCAGAATATGTGGAGGGTGCAACCAAGAGATTTATGGCGATTGTTTAGGAGTCGGTCACAGTTATTTTCATCCAGACTGCTTTCGGTGTCACTCTTGTCGTTACCCCATTACTGAGCGTGAGTTTTCTTTGTCAGGGAAGTATCCGTACCACAAGTCCTGTTTCAAGGAATTGACCCACCCTAGATGCGAAGTTTGCTATCAATTTATACCAATAAATGCTGCTGGTTTGATTGAGTATAGGTGCCACCCCTATTGGAACCAAAAGTATTGCCCATCTCATGAGCATGACAATACAGCTCGGTGCAGTAGTTGTGAAAGATTGGAGTCTCGGAATGAAAGATACTGTAGATTAGAAGACGGAAGGATTTTGTGCTTTGAGTGCATGGAATCTGCTATAAGCGACACTGGTGAATGTCAGCCTCTTTATCATGCTATCAGAGACTATTACGAAGGAATGAACATGAAAATAGATCAACAAATCCCAATGCTTCTTGTTGAGAGACAAGCACTTAATGATGCCATTGTTGGAGAGAAGAATGGTTTCCATCACCTGCCAGAAACAAGGGGCTTGTGCCTTTCAGAAGAGCAAACTGTCACAAGCGTGCAAAGACGGCCAAGAATTGGAGGTCATAGATTGATAGGGATGAGATCTCAACCTCAAAAGCTGATTAGAAAATGTGAAGTCACAGCTATTCTTGTTCTCTATGGCCTTCCAAGGTTACTCACAGGTGCTATACTTGCCCATGAGCTGATGCATGCTTGGTTACGCCTTAAAGGTTACCATAATCTTAGTCCTGAAGTAGAGGAAGGTATTTGTCAGGTCCTCTCTTACATGTGGCTTGAGGCAGAGGTGATGTCATGTTCTAGAACCATGCCATCAACATCATCAGCTTCTTCTTCCTCCTCCTTCTCCCACTCATCAAAGAAAGGTGCAAAATCTCACGTTGAACATAAATTGGGTGAGTTTTTCATGAACCAGATTGCCAATGATTCTTCCCCAGCTTATGGTGGTGGCTTTAGAGCGGCCAATGAAGCTGTGAATAAATATGGTTTACGTTGCACTCTGGAGCATATTCGTTTGACTGGTAATTTCCCAGTGTGA 1536 0.4395 MAPPSDINHLSHPCIYAGDFVSSYSERKSGFMKWFGKIFKIGSNRGRGGGRHLEQPEEENMAWSAPSRSRDDRARSRKEKEDLDHAIALSLGENFKRPTGYRWRTGARIDEDYAKALQDRMFSSAHPPYAPVPAYPHGYGIASHSRICGGCNQEIYGDCLGVGHSYFHPDCFRCHSCRYPITEREFSLSGKYPYHKSCFKELTHPRCEVCYQFIPINAAGLIEYRCHPYWNQKYCPSHEHDNTARCSSCERLESRNERYCRLEDGRILCFECMESAISDTGECQPLYHAIRDYYEGMNMKIDQQIPMLLVERQALNDAIVGEKNGFHHLPETRGLCLSEEQTVTSVQRRPRIGGHRLIGMRSQPQKLIRKCEVTAILVLYGLPRLLTGAILAHELMHAWLRLKGYHNLSPEVEEGICQVLSYMWLEAEVMSCSRTMPSTSSASSSSSFSHSSKKGAKSHVEHKLGEFFMNQIANDSSPAYGGGFRAANEAVNKYGLRCTLEHIRLTGNFPV 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2804g00005 511 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 144 172 - -
Vium2804g00005 511 ProSitePatterns LIM zinc-binding domain signature. 148 181 IPR001781 -
Vium2804g00005 511 Gene3D Cysteine Rich Protein 142 205 - -
Vium2804g00005 511 MobiDBLite consensus disorder prediction 45 81 - -
Vium2804g00005 511 Pfam LIM domain 148 200 IPR001781 -
Vium2804g00005 511 MobiDBLite consensus disorder prediction 50 81 - -
Vium2804g00005 511 SMART lim_4 147 198 IPR001781 -
Vium2804g00005 511 ProSiteProfiles LIM domain profile. 146 205 IPR001781 -
Vium2804g00005 511 PANTHER PROTEIN DA1-RELATED 2 34 510 IPR045218 -
Vium2804g00005 511 CDD LIM_DA1 148 199 - -
Vium2804g00005 511 Pfam Protein DA1 296 506 IPR022087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2804g00005 Vium-Chr2804 45567 50865 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium2804g00005 DA1-like 5.2e-100 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2804g00005 - - gmx:100798829 919.842