Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2804g00001 ATGGATACTGCTAGCAGATCCTCTCCCCATGTGTTCATAGTTCTGTGTTTTGCTTTATTTCTTCAACTATGTCATTCATCATCCGAACTGAAGAGCTACATTGTCTACACTGGCAATTCCATGAAGGATGAGGATTCTGCGTTGGCTCTTTATTCAAACATACTACTAGAAGTTGCAGACAGCAATGCCGATCCCAAGTCAGTGCAGCAGCACTACAAACGAAGTTTCGGTGGCTTTGTTGCTAAGCTAACGGAAGAGGAAGCCAATAGATTGGCTAGGCATGAAAGAGTGGTAGCTGTCTTTCCCAATCAAAAGAAGCAACTCCATACAACAAGGTCATGGGATTTTATTGGCTTTCCACTAAACGTAGACAGAGCAAATACTGAGAGTGATGTCATCATTGGAGTGCTTGACTCTGGAATCTGGCCAGAATCTAAGAGCTTCAGTGACGAAGGATTCGGTCCACCACCTAGTAAATGGAAGGGCACTTGCCAAAGTTCTAAAAATTTCACGTGCAACAATAAAATCATTGGGGCTAAGATTTACAAAGCTGATGGATTCTTTACCGATGACGACCCAAAATCTCCGTTAGACGTAGATGGTCATGGCACTCATACAGCATCGACAGCAGCAGGGAATCCAGTTAGTCAAGCAAGCATGTTAGGCCTTGCTCAGGGAACGGCAAGAGGTGGCGCGATAAAAGCGCGCATTGCTGTGTATAAAGTGTGTTGGTTAGATGAAGGTTGTTCTGATGCAGACATACTTGCTGCATTTGATGATGCAATTGCGGATGGGGTTGACATAATATCAGTTTCTCTTGGAGGTTTCAGTGACGAAAACTACTTTAGAGATGGAATTGGCATCGGAGCATTTCATGCTGTGAGAAAAGGAGTGTTGACAGTAACTTCAGCAGGGAACAATGGTCCAAAATATTCCTCCCTGTCCAATTTTTTGCCTTGGTCAATTACTGTGGCTGCGACTACCATAGACAGAAAGTTTGTTACCAAGGTTGGATTAGGTAACAACATTACCTATGAGGGTACCTCGATAAATACATTTGACCTCAAGGGAGAGTTGTATCCTATAATCTATGGTGGAGATGCACCAAGCAAAGGCTACGATTCATCGTCATCAAGGTTTTGCTTCAGCGGTTCGTTGGACAAAAAATTAGTGGAGGGTAAAATTGTTCTGTGTGACAGCAGAAGCAAAGCGATAGGCCCTTTCGATGCCGGTTCTGTTGGGGCATTGATACAAGGTCAAAGTTCTAGAGATCTTACTCCTAGTCTTCCATTACCAGGATCTTACCTCGAATTGAAGGATGGTGCCTCTGTACTCGACTACATAAACTCCACGAGGACTCCAACTGCAACCATATTTAAGACTGATGTGACAGATGATACAATAGCCCCTGTTGTGGCCTCTTTCTCTTCAAGGGGTCCAAACATTGTTACACCCGAAGTTCTCAAGCCGGATTTAGTGGCTCCTGGAGTAGCCATTTTAGCTAGTTGGTCTCCAGTTTCTCCTCCTTCTGATGTTGAAGGTGACAACAGAACATTAAACTTCAACATCATTTCCGGAACTTCAATGTCTTGTCCACATGTTTCTGGGGCAGCGGCATATGTGAAGTCATTCCACCCAACATGGTCTCCTGCTGCTATTCGTTCAGCTCTAATGACAACAGCTAAACAACTTAGTCCAAAGATTAACCTTTACGCAGAACTGTCATATGGGGCAGGCCAAATTGATCCTTCGAAGGCTGTGTTCCCTGGTTTAGTATATGATGCTGGTGAAATAGACTATGTAAGGTTCTTATGTGGACAAGGGTATAGTTCAAGGAATTTACAACTCATAACAGGAGACAACAGTAGCTGCTCCGAAGCAAGTTCAGCAAGGGATCTAAACTATCCCTCATTTGCACTTTTTTCCCCAATCTCCAAGTCGAATGGAGTAAGTGGGAGTTTTAACAGGACTGTTACAAATGTTGGGTCATCAACGTCGACGTATAAAGCTAAGGTGATTGGTCCTGCAGGACTAAAAATTGAAGCGAACCCGAGTGTTTTGTCATTCAGTTCTCTTAACCAAAAGCTCTCATTTGTGCTCACCATTGAGGGAACTATAAAGGAACCTGTAGTATCAGCCTCTTTGACTTGGGATGATGGTGAATTCCAAGTGAGGAGCCCCATTGTTGTGTTTAACACAGTATAA 2205 0.4354 MDTASRSSPHVFIVLCFALFLQLCHSSSELKSYIVYTGNSMKDEDSALALYSNILLEVADSNADPKSVQQHYKRSFGGFVAKLTEEEANRLARHERVVAVFPNQKKQLHTTRSWDFIGFPLNVDRANTESDVIIGVLDSGIWPESKSFSDEGFGPPPSKWKGTCQSSKNFTCNNKIIGAKIYKADGFFTDDDPKSPLDVDGHGTHTASTAAGNPVSQASMLGLAQGTARGGAIKARIAVYKVCWLDEGCSDADILAAFDDAIADGVDIISVSLGGFSDENYFRDGIGIGAFHAVRKGVLTVTSAGNNGPKYSSLSNFLPWSITVAATTIDRKFVTKVGLGNNITYEGTSINTFDLKGELYPIIYGGDAPSKGYDSSSSRFCFSGSLDKKLVEGKIVLCDSRSKAIGPFDAGSVGALIQGQSSRDLTPSLPLPGSYLELKDGASVLDYINSTRTPTATIFKTDVTDDTIAPVVASFSSRGPNIVTPEVLKPDLVAPGVAILASWSPVSPPSDVEGDNRTLNFNIISGTSMSCPHVSGAAAYVKSFHPTWSPAAIRSALMTTAKQLSPKINLYAELSYGAGQIDPSKAVFPGLVYDAGEIDYVRFLCGQGYSSRNLQLITGDNSSCSEASSARDLNYPSFALFSPISKSNGVSGSFNRTVTNVGSSTSTYKAKVIGPAGLKIEANPSVLSFSSLNQKLSFVLTIEGTIKEPVVSASLTWDDGEFQVRSPIVVFNTV 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2804g00001 734 Gene3D - 604 732 - -
Vium2804g00001 734 Pfam Peptidase inhibitor I9 32 109 IPR010259 -
Vium2804g00001 734 CDD Peptidases_S8_3 106 561 IPR034197 -
Vium2804g00001 734 ProSiteProfiles Serine proteases, subtilase domain profile. 113 587 - -
Vium2804g00001 734 SUPERFAMILY Subtilisin-like 108 590 IPR036852 GO:0004252|GO:0006508
Vium2804g00001 734 Gene3D - 330 465 - -
Vium2804g00001 734 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 33 730 IPR045051 -
Vium2804g00001 734 CDD PA_subtilisin_like 337 458 - -
Vium2804g00001 734 Pfam Subtilase family 130 568 IPR000209 GO:0006508|GO:0008236
Vium2804g00001 734 Gene3D Peptidase S8/S53 domain 131 600 IPR036852 GO:0004252|GO:0006508
Vium2804g00001 734 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 21 109 IPR037045 -
Vium2804g00001 734 ProSitePatterns Serine proteases, subtilase family, serine active site. 526 536 IPR023828 -
Vium2804g00001 734 PRINTS Subtilisin serine protease family (S8) signature 129 148 IPR015500 -
Vium2804g00001 734 PRINTS Subtilisin serine protease family (S8) signature 525 541 IPR015500 -
Vium2804g00001 734 PRINTS Subtilisin serine protease family (S8) signature 198 211 IPR015500 -
Vium2804g00001 734 FunFam Subtilisin-like protease SBT1.5 131 341 - -
Vium2804g00001 734 Pfam Fibronectin type-III domain 632 730 IPR041469 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2804g00001 Vium-Chr2804 1036 5298 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2804g00001 33 731 Subtilisin-like Serine Gene Family AT5G59100 47.692 0.0 637
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2804g00001 - - gmx:100795826 1211.05