Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2803g00002 ATGAACCCCACCGATGACAACTCTCCCAAGCCCTTAGAGGTTCTGCAGATGAACCCGGTTCCGCCGTTTCTGTCCAAGACCTTCGACCTCGTCGATGACCCCACTCTCGACCCCATCATCTCCTGGGCCTCCTCCGGCTTTAGCTTCGTCGTCTGGGACCCTCTGGAGTTCGCCAGAGTCGTCTTGCCGCGACATTTCAAGCACAACAACTTCTCCAGTTTCGTTCGCCAGCTTAATACTTATGGATTCCGGAAGATTGACACGGACAAGTGGGAGTTTTTCAATGAAGCATTCCAGCGATCGAAGAAGCACTTGCTGAAGAACATACAAAGACGTAGATCACCACAATCCCAGCAGGTTGGTAGCTATATTGGAATTGGATCTTCTACCACTGAGGCAGGGAGGTCTGAGGTTGAGGTTGAGGTTGAGATAGAAAAGCTTAGGAAAGAAAGGACTATCTTGATGGAAGAAGTGGTTGATTTGCAGCAAGAGCAACGAAGAACTGCTAACCGTGCAGGAGAAGTGAATCAAAGACTGCAATCTGCAGAACAAAGGCAGAAAAAAATGGTTTCTTTCCTGGCCAAGTTGATCCAAAACCCAGCCTTTTTAGCCCGCCTAAGGCAAAAGAAAGAACAAAGAGAAATAGATTCTCCAAGAGTGGTAAGGAAGTTTGTCAAGCAGCACCAACATGAAACTGGAACAGCAGAAGCTCTCCAAGAAGGACAGATAGTGAGGTACCAACCTGATTGGACAAATATAGACATGTCTTCTGAATCTCCAAAACTAAGTCCAGTTTCCATTGAGCAGTCTCCTCACTACCTTTCACAGGGTTTGGCGGGAGAAATGAGTGGAGGTGCACAAGATCTCACTGTTCAAATTCAGAATATTGTAACAGATGATTTGGCTGCAGTGCACAGGATCACATCACCTCAAGAAAAGATGATTGGAGAAGGATCATCTGAAGACCTCCTTGTCAAAGGGAAGAGTGTTATGAGCCCTAGTCTAGAACTTCCTCCAGATTATTTTACTTCCTTCCCAGAGGTTTTGACCCAGGAGAAAGGCTTTCAAGATTTTTCTGCTCTTGGAGCTGAAGACATTATCAAGCTTGAAGATATATGGGATACTGGCCTCAATCTTAGTGGTGTTGGTGCTGGTTCAAGTTGTGGGAATGAGCTGTGGGGAAATCCTATGAATTATGAACATGTTCCAGAGTTTGGAGTAACAAGTGGCATGTCTGAGTCAGACATGTGGGATATTGGCTCTGGAAGTTTGGGAATTGATAAGTGGGCAGGTGATGAACCTTCTGTTGGTGAACTAGATGGTCAATCTGGTCAGCCAAAAGAAGATAGGCCTCAGAATCTTGATCCATAG 1371 0.4581 MNPTDDNSPKPLEVLQMNPVPPFLSKTFDLVDDPTLDPIISWASSGFSFVVWDPLEFARVVLPRHFKHNNFSSFVRQLNTYGFRKIDTDKWEFFNEAFQRSKKHLLKNIQRRRSPQSQQVGSYIGIGSSTTEAGRSEVEVEVEIEKLRKERTILMEEVVDLQQEQRRTANRAGEVNQRLQSAEQRQKKMVSFLAKLIQNPAFLARLRQKKEQREIDSPRVVRKFVKQHQHETGTAEALQEGQIVRYQPDWTNIDMSSESPKLSPVSIEQSPHYLSQGLAGEMSGGAQDLTVQIQNIVTDDLAAVHRITSPQEKMIGEGSSEDLLVKGKSVMSPSLELPPDYFTSFPEVLTQEKGFQDFSALGAEDIIKLEDIWDTGLNLSGVGAGSSCGNELWGNPMNYEHVPEFGVTSGMSESDMWDIGSGSLGIDKWAGDEPSVGELDGQSGQPKEDRPQNLDP 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2803g00002 456 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium2803g00002 456 PRINTS Heat shock factor (HSF) domain signature 23 46 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium2803g00002 456 PRINTS Heat shock factor (HSF) domain signature 74 86 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium2803g00002 456 SMART hsfneu3 19 112 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium2803g00002 456 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 9 245 IPR027725 -
Vium2803g00002 456 Pfam HSF-type DNA-binding 23 112 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium2803g00002 456 FunFam Heat stress transcription factor B-4 15 113 - -
Vium2803g00002 456 Gene3D - 15 113 IPR036388 -
Vium2803g00002 456 Coils Coil 137 164 - -
Vium2803g00002 456 ProSitePatterns HSF-type DNA-binding domain signature. 62 86 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium2803g00002 456 MobiDBLite consensus disorder prediction 423 456 - -
Vium2803g00002 456 SUPERFAMILY "Winged helix" DNA-binding domain 19 112 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2803g00002 Vium-Chr2803 41972 45377 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2803g00002 9 419 HSF AT5G03720 45.215 2.84e-104 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vium2803g00002 HSF_DNA-bind 1.8e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2803g00002 K09419 - gmx:100780835 737.643