Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2803g00001 ATGGAAATGCCTGCTAGAAGATCCAACTACTCGCTCCTCAGCCAAATTCCTGACGACCAGTTCTCCGGCGCCTCCGCACCGTCCTCCTCCGGCGACGGAAAGACAGGCCGCGCCGGCAAGTCGGACCGCGTCTTCGACTGGGACCTCGTCTCCGATCACAGGGCGGCTCAGCAGGGGGCCAACCGGATCGGAAACCTGTACTCCTCGATCGGCCTGCAGAGGCAGTCCAGCGGGAGCAGCTACGGCGAGAGTTCGCTATCCGGCTGCGGCGACTTCTATGCTCCGACGCTGTCCACGGCGGCGGCCAGTGACGCTGACGCCTTTGGCTACCTCCACGACGATAGGAGCAAGTTTTCTGAGGCCCCGGCGAGGATCGCGGGCTCCTCCGGGAAGAGCTGGGCGCAGCAGACGGAGGAAAGCTACCAGCTGCAGCTCGCGCTCGCGCTGCGTCTCTCGTCGGACGCCACGTGCGCGGATGATCCCAATTTCCTCGATCCGATGCCTGACGATGGGGCCTTGCGGCTCTCGTCATCGGCGGACGCGGTTTCGCATAGGTTTTGGGTGAAGGGCTGCCTGTCATATTCTGACAAAATTCCAGATGGCTTTTACTTAATTCACGGGATGGATTCTTTTGTCTGGACTTTATGCACTGATCTGCATGAAAATGGTCGAATTCCTTCAGTTGATATGCTGAAGTCTGTGAATCCCTGCATTGTTTCTTCACTTGAAGTAGTTTTGGTAGATCAACGCAGTGACCCCAGCTTAAGAGATCTGCAAAATAGAGCTCATAACATTTCTTGTAGCAGCATAACAACATCAGATGTTGTAGATCAGCTCTCCAAGCTGGTTTGCAACCGTATGGGGGGATCAGCTTCTGTTGGGGAAGATAACCTTGTTTCCATCTGGAGTGATTGCAGTAATGATCTTAAAGATTGTTTGGGATCTGTTGTTATTCCTATAGGTAGTCTATCTGTCGGCCTTTGCAGGCATCGTGCTATATTATTCAAAGTACTAGCTGATGCGATCGATTTGCCATGTCGAATTGCAAAGGGCTGTAAATATTGCAAAAGGGATGATGCCTCATCTTGTCTTGTACGATTTGGGCTGGACAGGGAATATCTCGTTGATTTAATTGGAATGCCAGGACACTTATCTGAGCCTGATTCCTTGCTCAATGGTCCATCTTCCATCTCATTTTCTTCACCCTTGCGCTTTCCAAGACTCAAACCAGATGAACCTACCATTGATTTCAGGTCACTGGCCAAACAGTATTTCTCGGACTGTCTGTCTCTTGAGCTCGTCTTTGACAACAGTTCAGCAGAGCAGTTTGATGGGAAGTACAAAGACAGGAATAACCCGAGGCCAATTTCAACAGACAGCAATAGAAATTCCCACCTTCCTCTCCATCCCCAAGATTCTCATCCCAGCACACGTGAACAGTTTTCTGAAACGTATGTACCAGGTAATGCTCCCCAGAACATTGTAGACTCAACCGTGGGAAAGTATCCACCACCAGTAAAGCATAAGCGTCCTGTTGGTATGCCAACCCCCTTAGCACTTACAAATACTAATGATGACATGATTGAGGGCAAGAGGTTTGTTGAAGGAAGTCAACTAATTCCTAGTAAACCTACCCGAGAGCTTACACTTGACATGGAGGATTTGGACATCCCATGGAGTGATCTTGTTTTAAGAGAGAAAATTGGGTCAGGTTCTTTTGGAACTGTACATCGAGCTGAGTGGAATGGCTCGGATGTTGCTGTGAAAATTTTGATGGAACAGGATTTTCATGCTGAGCGCTTCCAGGAGTTCCTGAGGGAGGTTACAATAATGAAACGTTTGCGGCATCCAAACATTGTTTTGTTTATGGGAGCAGTCACTCAGCCCCCTAACTTATCAATTGTCACGGAATATTTATCAAGGGGTAGCTTATATAGGCTGTTGCATAGATCTGGTGCCAAAGAGGTGTTGGATGAGAGGCGTAGGCTTAGTATGGCTTATGATGTGGCAAAGGGGATGAATTATCTTCATAAACGAAACCCCCCCATTGTTCATAGAGATCTGAAATCTCCAAACCTTCTCGTTGACAAGAAATATACAGTGAAGGTTTGTGATTTTGGGCTTTCCCGTCTGAAAGCCAATACATTTCTCTCATCCAAGTCTGCTGCTGGGACCCCTGAGTGGATGGCTCCAGAGGTTCTTCGCGATGAGCCATCAAATGAGAAGTCAGATATTTACAGCTTTGGTGTAATCTTATGGGAGCTTGCAACATTGCAACAGCCATGGGTTAATTTAAATCCAGCACAGGTTGTGGCAGCTGTTGGTTTTAAGGGAAAAAGGCTTGAGATCCCACGTGATGTGAATCCCCAAGTAGCTGCCCTAATCGAGGCTTGCTGGGCCAACGAGCCTTGGAAACGACCTTCTTTTGCGAGTATTATGGATTCTTTAAGGCCATTGCTGAAACCCCCTACACCTCAACCTGGTCGTCCGAACATGTCATTACTCAGCTGA 2511 0.4871 MEMPARRSNYSLLSQIPDDQFSGASAPSSSGDGKTGRAGKSDRVFDWDLVSDHRAAQQGANRIGNLYSSIGLQRQSSGSSYGESSLSGCGDFYAPTLSTAAASDADAFGYLHDDRSKFSEAPARIAGSSGKSWAQQTEESYQLQLALALRLSSDATCADDPNFLDPMPDDGALRLSSSADAVSHRFWVKGCLSYSDKIPDGFYLIHGMDSFVWTLCTDLHENGRIPSVDMLKSVNPCIVSSLEVVLVDQRSDPSLRDLQNRAHNISCSSITTSDVVDQLSKLVCNRMGGSASVGEDNLVSIWSDCSNDLKDCLGSVVIPIGSLSVGLCRHRAILFKVLADAIDLPCRIAKGCKYCKRDDASSCLVRFGLDREYLVDLIGMPGHLSEPDSLLNGPSSISFSSPLRFPRLKPDEPTIDFRSLAKQYFSDCLSLELVFDNSSAEQFDGKYKDRNNPRPISTDSNRNSHLPLHPQDSHPSTREQFSETYVPGNAPQNIVDSTVGKYPPPVKHKRPVGMPTPLALTNTNDDMIEGKRFVEGSQLIPSKPTRELTLDMEDLDIPWSDLVLREKIGSGSFGTVHRAEWNGSDVAVKILMEQDFHAERFQEFLREVTIMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHRSGAKEVLDERRRLSMAYDVAKGMNYLHKRNPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKANTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDIYSFGVILWELATLQQPWVNLNPAQVVAAVGFKGKRLEIPRDVNPQVAALIEACWANEPWKRPSFASIMDSLRPLLKPPTPQPGRPNMSLLS 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2803g00001 836 Gene3D Transferase(Phosphotransferase) domain 1 641 825 - -
Vium2803g00001 836 SMART serkin_6 562 820 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2803g00001 836 Pfam Ethylene-responsive protein kinase Le-CTR1 179 384 - -
Vium2803g00001 836 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 136 819 - -
Vium2803g00001 836 FunFam Serine/threonine-protein kinase isoform 1 552 640 - -
Vium2803g00001 836 CDD STKc_MAP3K-like 568 816 - -
Vium2803g00001 836 MobiDBLite consensus disorder prediction 443 523 - -
Vium2803g00001 836 ProSiteProfiles Protein kinase domain profile. 562 820 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2803g00001 836 Pfam Protein tyrosine and serine/threonine kinase 563 816 IPR001245 GO:0004672|GO:0006468
Vium2803g00001 836 MobiDBLite consensus disorder prediction 8 35 - -
Vium2803g00001 836 MobiDBLite consensus disorder prediction 1 39 - -
Vium2803g00001 836 MobiDBLite consensus disorder prediction 456 496 - -
Vium2803g00001 836 FunFam Serine/threonine-protein kinase CTR1 641 826 - -
Vium2803g00001 836 Gene3D Phosphorylase Kinase; domain 1 555 640 - -
Vium2803g00001 836 PRINTS Tyrosine kinase catalytic domain signature 677 695 IPR001245 GO:0004672|GO:0006468
Vium2803g00001 836 PRINTS Tyrosine kinase catalytic domain signature 724 734 IPR001245 GO:0004672|GO:0006468
Vium2803g00001 836 PRINTS Tyrosine kinase catalytic domain signature 743 765 IPR001245 GO:0004672|GO:0006468
Vium2803g00001 836 PRINTS Tyrosine kinase catalytic domain signature 787 809 IPR001245 GO:0004672|GO:0006468
Vium2803g00001 836 PRINTS Tyrosine kinase catalytic domain signature 636 649 IPR001245 GO:0004672|GO:0006468
Vium2803g00001 836 ProSitePatterns Protein kinases ATP-binding region signature. 568 589 IPR017441 GO:0005524
Vium2803g00001 836 SUPERFAMILY Protein kinase-like (PK-like) 540 815 IPR011009 -
Vium2803g00001 836 ProSitePatterns Serine/Threonine protein kinases active-site signature. 683 695 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2803g00001 Vium-Chr2803 31095 40106 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2803g00001 1 832 MAP Kinase Kinase Kinase AT5G03730 65.127 0.0 1001
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Vium2803g00001 PK_Tyr_Ser-Thr 3.2e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2803g00001 K14510 - gmx:100800648 1498.03