Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2802g00002 ATGGCAATTATCATCTTTTATTTTTTTCTCATGCTGCTTTTAATGATGTTCGGATTAGACTTTGTATATGTGGGCACTTTTCATGATGATGATACTGGCATAATTTATGCAGATCGTGGCTACTATTCAGTGGAGACTGTTACACTTTTGGTGGCCTTGAAAGTCCGTTATAGAGATAGAATTACAATCCTTAGGGGAAATCATGAGAGTCGTCAAATCACTCAAGTGTATGGGTTCTACGATGAATGTTTGAGAAAATATGGAAATGCTAATGTCTGGAAATTCTTTACCGACTTGTTTGATTATTTGCCTTTGACTGCCCTTATTGAGAGTCAGATTTTCTGCTTGCATGGTGGTCTCTCACCATCTTTGGATACACTGGATAATATTCGGGCGTTGGATCGCATACAGGAGGTTCCACACGAAGGACCAATGTGTGACCTATTGTGGTCTGATCCAGATGATCGCTGTGGTTGGGGAATATCTCCACGTGGTGCAGGATATACATTTGGACAGGACATAGCTACTCAGTTTAATCATACCAATGGTCTCTCCCTAATATCTAGAGCTCACCAGCTTGTCATGGAAGGATACAATTGGTGCCAGGACAAGAATGTGGTGACTGTTTTTAGTGCACCTAATTATTGTTACCGATGTGGGAACATGGCTGCCATACTGGAAATTGGAGAGAATATGGATCAGAATTTTCTGCAGTTTGATCCAGCTCCCAGACAAATTGAGCCTGATACTACACGAAAGACTCCAGATTATTTTTTGTAA 780 0.4064 MAIIIFYFFLMLLLMMFGLDFVYVGTFHDDDTGIIYADRGYYSVETVTLLVALKVRYRDRITILRGNHESRQITQVYGFYDECLRKYGNANVWKFFTDLFDYLPLTALIESQIFCLHGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDIATQFNHTNGLSLISRAHQLVMEGYNWCQDKNVVTVFSAPNYCYRCGNMAAILEIGENMDQNFLQFDPAPRQIEPDTTRKTPDYFL 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2802g00002 259 Gene3D - 34 259 IPR029052 -
Vium2802g00002 259 Pfam Calcineurin-like phosphoesterase 36 192 IPR004843 GO:0016787
Vium2802g00002 259 SMART pp2a_7 1 243 IPR006186 GO:0016787
Vium2802g00002 259 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 36 259 IPR047129 GO:0004722
Vium2802g00002 259 PRINTS Serine/threonine phosphatase family signature 205 221 IPR006186 GO:0016787
Vium2802g00002 259 PRINTS Serine/threonine phosphatase family signature 63 87 IPR006186 GO:0016787
Vium2802g00002 259 PRINTS Serine/threonine phosphatase family signature 183 203 IPR006186 GO:0016787
Vium2802g00002 259 PRINTS Serine/threonine phosphatase family signature 98 124 IPR006186 GO:0016787
Vium2802g00002 259 PRINTS Serine/threonine phosphatase family signature 127 154 IPR006186 GO:0016787
Vium2802g00002 259 PRINTS Serine/threonine phosphatase family signature 30 57 IPR006186 GO:0016787
Vium2802g00002 259 SUPERFAMILY Metallo-dependent phosphatases 36 246 IPR029052 -
Vium2802g00002 259 ProSitePatterns Serine/threonine specific protein phosphatases signature. 64 69 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2802g00002 Vium-Chr2802 2307 4665 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2802g00002 36 178 Calmodulin-binding Proteins AT5G63870 34.078 1.77e-19 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2802g00002 K04382 - nnu:104596284 472.241