Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2802g00001 CCTCGTTGTCTATATCTTTCAAATGTTTTCAGGTATGGGTTCTACGATGAATGTTTGAGAAAATATGGAAATGCTAATGTCTGGAAATTCTTTACCGACTTGTTTGATTATTTGCCTTTGACTGCCCTTATTGAGAGTCAGATTTTCTGCTTGCATGGTGGTCTCTCACCATCTTTGGATACACTGGATAATATTCGGGCGTTGGATCGCATACAGGAGGTTCCACACGAAGGACCAATGTGTGACCTATTGTGGTCTGATCCAGATGATCGCTGTGGTTGGGGAATATCTCCACGTGGTGCAGGATATACATTTGGACAGGACATAGCTACTCAGTTTAATCATACCAATGGTCTCTCCCTAATATCTAGAGCTCACCAGCTTGTCATGGAAGGATACAATTGGTGCCAGGACAAGAATGTGGTGACTGTTTTTAGTGCACCTAATTATTGTTACCGATGTGGGAACATGGCTGCCATACTGGAAATTGGAGAGAATATGGATCAGAATTTTCTGCAGTTTGATCCAGCTCCCAGACAAATTGAGCCTGATACTACACGAAAGACTCCAGATTATTTTTTGTAA 585 0.4188 PRCLYLSNVFRYGFYDECLRKYGNANVWKFFTDLFDYLPLTALIESQIFCLHGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDIATQFNHTNGLSLISRAHQLVMEGYNWCQDKNVVTVFSAPNYCYRCGNMAAILEIGENMDQNFLQFDPAPRQIEPDTTRKTPDYFL 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2802g00001 194 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 12 194 IPR047129 GO:0004722
Vium2802g00001 194 SUPERFAMILY Metallo-dependent phosphatases 10 181 IPR029052 -
Vium2802g00001 194 SMART pp2a_7 2 178 IPR006186 GO:0016787
Vium2802g00001 194 PRINTS Serine/threonine phosphatase family signature 140 156 IPR006186 GO:0016787
Vium2802g00001 194 PRINTS Serine/threonine phosphatase family signature 118 138 IPR006186 GO:0016787
Vium2802g00001 194 PRINTS Serine/threonine phosphatase family signature 62 89 IPR006186 GO:0016787
Vium2802g00001 194 PRINTS Serine/threonine phosphatase family signature 33 59 IPR006186 GO:0016787
Vium2802g00001 194 Pfam Calcineurin-like phosphoesterase 13 127 IPR004843 GO:0016787
Vium2802g00001 194 Gene3D - 5 194 IPR029052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2802g00001 Vium-Chr2802 805 2172 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2802g00001 12 113 Calmodulin-binding Proteins AT5G63870 30.435 2.83e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2802g00001 K04382 - nnu:104596284 394.815