Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium27g00002 ATGAGCCAACGTGTCCCTAGCTGTGATGTGGACGACAACACCATTTCCACACCAACAAAATTCCCTCTTATTTCCACCTCCAATTTCATCGCCCATGAAGTCCCAATGTTGGGCTACAAACTGGCATGCAAAAAGGGACAGCCTTCCACCCACCAACACACTCCTGCGAACCAAACAACATGGGAGATACCTCGTACAAGTGGAACCTTGGAGTCCATCGTCAACCATGGTATCGCCAAAAACTGCCACCAGTTACTTACTAAGGACGCCTTGGTGCCCTCTTTTCCCAAACAGGGAACAGTGTTTGGCGCGTGCAAGAAGGGTTACCCTGGGCGCGTGGAGTCTGGGGTGGTGGCGCGTGGTCCCCCAACCTATGAGTTGACTGGCGTCAAAGACTCCAGTATGAGCGGTTGTGACACCTGTCCGCGGGAGTTGAGCGTCACTTTCAATTCAGCCACCATGGGTTTGCCTGAAAACACCAGTAGCTCCGTTAAGCAGTGTACGGAGACCACTGCCAACGACTACCGTGATTCCGTAAGCCACCGTAGGTCGCAGAGTGAGGGACGGAAAGAAGATTGTAAGACAAGTGGAGTTGATAGATCTTGTGAATCCAACAAAAGAATAAAAGCTTCAGCTGTACACAACCAATCTGAAAGGAGAAGGAGAGATAAGATCAACCAAAGAATGAAGGAATTGCAAAAGCTGGTCCCCAATTCCAGCAAGACAGACAAAGCTTCGATGCTGGATGAGGTTATCCAATACATGAAGCAATTGCAAGCACATTTGCAAATGATGAATTGGATGAAAATGTACTCGTCGATGATGCTGCCAATTACCATGCAACAGCAACAACTTAAGATGTCCATGCTGATGGCTCAAATGGGCATGGGAATGAGAATGAGTAAAGACATGGCTATCAATATGAACATGAATATGGATATGAATATGAATATGAACAACATGAACATTCCCACCATTGCTCCCATGCTCCATCTTCCTCCCTTCATGCCTATGGCTTCATGTGCTGATCGATTACTGGCAGAACCAGAAAAGTCAGAGACAGTGGATGCATACAGTAAGATGGCTGCTCTGTATAATCAGATGTATCATCATCCTCCAGATTCAAGTTCCAAGAAATGA 1140 0.4684 MSQRVPSCDVDDNTISTPTKFPLISTSNFIAHEVPMLGYKLACKKGQPSTHQHTPANQTTWEIPRTSGTLESIVNHGIAKNCHQLLTKDALVPSFPKQGTVFGACKKGYPGRVESGVVARGPPTYELTGVKDSSMSGCDTCPRELSVTFNSATMGLPENTSSSVKQCTETTANDYRDSVSHRRSQSEGRKEDCKTSGVDRSCESNKRIKASAVHNQSERRRRDKINQRMKELQKLVPNSSKTDKASMLDEVIQYMKQLQAHLQMMNWMKMYSSMMLPITMQQQQLKMSMLMAQMGMGMRMSKDMAINMNMNMDMNMNMNNMNIPTIAPMLHLPPFMPMASCADRLLAEPEKSETVDAYSKMAALYNQMYHHPPDSSSKK 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium27g00002 379 FunFam transcription factor UNE10 isoform X1 204 269 - -
Vium27g00002 379 Pfam Helix-loop-helix DNA-binding domain 213 259 IPR011598 GO:0046983
Vium27g00002 379 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 209 258 IPR011598 GO:0046983
Vium27g00002 379 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 211 276 IPR036638 GO:0046983
Vium27g00002 379 CDD bHLH_AtPIF_like 209 271 IPR047265 -
Vium27g00002 379 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 81 377 IPR031066 -
Vium27g00002 379 SMART finulus 215 264 IPR011598 GO:0046983
Vium27g00002 379 Coils Coil 215 235 - -
Vium27g00002 379 Gene3D - 204 270 IPR036638 GO:0046983
Vium27g00002 379 MobiDBLite consensus disorder prediction 153 201 - -
Vium27g00002 379 MobiDBLite consensus disorder prediction 153 174 - -
Vium27g00002 379 MobiDBLite consensus disorder prediction 175 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium27g00002 Vium-Chr27 16142 20031 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium27g00002 1 272 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 38.033 2.65e-39 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium27g00002 HLH 1.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium27g00002 - - gmx:100820284 429.098