Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium27g00001 ATGTTGGGCTACAAACTGGCATGCAAAAAGGGACAGCCTTCCACCCACCAACACACTCCTGCGAACCAAACAACATGGGAGATACCTCGTACAAGTGGAACCTTGGAGTCCATCGTCAACCATGGTATCGCCAAAAACTGCCACCAGTTACTTACTAAGGACGCCTTGGTGCCCTCTTTTCCCAAACAGGGAACAGTGTTTGGCGCGTGCAAGAAGGGTTACCCTGGGCGCGTGGAGTCTGGGGTGGTGGCGCGTGGTCCCCCAACCTATGAGTTGACTGGCGTCAAAGACTCCAGTATGAGCGGTTGTGACACCTGTCCGCGGGAGTTGAGCGTCACTTTCAATTCAGCCACCATGGGTTTGCCTGAAAACACCAGTAGCTCCGTTAAGCAGTGTACGGAGACCACTGCCAACGACTACCGTGATTCCGTAAGCCACCGTAGGTCGCAGAGTGAGGGACGGAAAGAAGATTGTAAGACAAGTGGAGTTGATAGATCTTGTGAATCCAACAAAAGAATAAAAGCTTCAGCTGTACACAACCAATCTGAAAGGAGAAGGAGAGATAAGATCAACCAAAGAATGAAGGAATTGCAAAAGCTGGTCCCCAATTCCAGCAAGACAGACAAAGCTTCGATGCTGGATGAGGTTATCCAATACATGAAGCAATTGCAAGCACATTTGCAAATGATGAATTGGATGAAAATGTACTCGTCGATGATGCTGCCAATTACCATGCAACAGCAACAACTTAAGATGTCCATGCTGATGGCTCAAATGGGCATGGGAATGAGAATGAGTAAAGACATGGCTATCAATATGAACATGAATATGGATATGAATATGAATATGAACAACATGAACATTCCCACCATTGCTCCCATGCTCCATCTTCCTCCCTTCATGCCTATGGCTTCATGTGCTGATCGATTACTGGCAGAACCAGAAAAGTCAGAGACAGTGGATGCATACAGTAAGATGGCTGCTCTGTATAATCAGATGTATCATCATCCTCCAGATTCAAGTTCCAAGAAATGA 1035 0.4676 MLGYKLACKKGQPSTHQHTPANQTTWEIPRTSGTLESIVNHGIAKNCHQLLTKDALVPSFPKQGTVFGACKKGYPGRVESGVVARGPPTYELTGVKDSSMSGCDTCPRELSVTFNSATMGLPENTSSSVKQCTETTANDYRDSVSHRRSQSEGRKEDCKTSGVDRSCESNKRIKASAVHNQSERRRRDKINQRMKELQKLVPNSSKTDKASMLDEVIQYMKQLQAHLQMMNWMKMYSSMMLPITMQQQQLKMSMLMAQMGMGMRMSKDMAINMNMNMDMNMNMNNMNIPTIAPMLHLPPFMPMASCADRLLAEPEKSETVDAYSKMAALYNQMYHHPPDSSSKK 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium27g00001 344 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 174 223 IPR011598 GO:0046983
Vium27g00001 344 SMART finulus 180 229 IPR011598 GO:0046983
Vium27g00001 344 MobiDBLite consensus disorder prediction 118 164 - -
Vium27g00001 344 Pfam Helix-loop-helix DNA-binding domain 178 224 IPR011598 GO:0046983
Vium27g00001 344 Coils Coil 180 200 - -
Vium27g00001 344 Gene3D - 169 235 IPR036638 GO:0046983
Vium27g00001 344 MobiDBLite consensus disorder prediction 118 139 - -
Vium27g00001 344 FunFam transcription factor UNE10 isoform X1 169 234 - -
Vium27g00001 344 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 46 342 IPR031066 -
Vium27g00001 344 CDD bHLH_AtPIF_like 174 236 IPR047265 -
Vium27g00001 344 MobiDBLite consensus disorder prediction 140 164 - -
Vium27g00001 344 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 176 241 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium27g00001 Vium-Chr27 16142 20136 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium27g00001 33 237 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 41.810 1.09e-33 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium27g00001 HLH 1.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium27g00001 - - gmx:100820284 383.259