Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2797g00011 ATGTCTCCACCATTGCTGGGCATAGGAGAGGAGGAGGGTAAAAGCAATGTCACTATGTTGGTTTCCTCATCAACCACCATGGAAAGTGTGTGCCTGAAGACCTTAGAATTGAAAGAACGCAACTACATGGGGTTATCTGATTGTTCTTCTGTAGACAGCTCAGTTCCGTCTTTCTCAGAAGAGACTAAAAGTAATCTGAACCTGAAAGCCACCGAGCTCAGGCTTGGGCTTCCGGGATCACAGTCCCCTGAAAGAGATTCCGATTTTTGCTTAAGAAGCTCAACTCAATTTGATGAAAAACCCTTGTTTCCTTTGCGTCCTCTCACTGACGATCACCATTCTTCAACCAAGACTGCTGTTTTGGGAAGCAAGAGAGGGTTTTCAGATGCCATGAATGGCTTCTCGGAGGGGAAGTTCCTAATTGATTCTGATAACAATCCTATACTATCTCCGAGGCCCGGTTCTAACTTGGGATTAAACCCTGGTTCTACACTTGAGAAGGCTGGGGCTCAGCAAATCAAAATGAAAGAAGCAGCAACAGCAAAGGAGCCTCATTCTGCCAATGAAACTAGACCAAGTATTAATTGTTCTGCAAATAACAGTAACAGTGCACCAGCTACCAAGGCTCAGGTTGTGGGGTGGCCCCCTATAAGATCATTCAGGAAGAATTCATTGGCAACTAATTCAAAGAACAATGAAGAAGTTGATGAAAAAGTAGGGGGTGGTGCACTGTTCGTCAAAGTCAGTATGGATGGTGCTCCCTATTTAAGGAAAGTGGACTTGAATAATTACTCTACATATCCAGAATTATCTTCTGCTCTTGAGAAGATGTTCAGCTGTTTTACCATAAGTCAGTGTGGATCTCATGGAATTCTGGGCAGGGAAATGCTGAATGAAACCAAGCTGAAGGACCTTCTTCATGGATCAGAATATGTTCTTACATATGAGGACAAAGATGGAGATTGGATGCTTGTGGGTGATGTTCCCTGGGAGATGTTTATTGAAACATGCAAGAGGTTGAGGATCATGAAGAGTTCTGATGCCATTGGTTTAGCTCCCAGGGCTGTTGAAAAAAGCAAAAGCAGGACCTAG 1092 0.4377 MSPPLLGIGEEEGKSNVTMLVSSSTTMESVCLKTLELKERNYMGLSDCSSVDSSVPSFSEETKSNLNLKATELRLGLPGSQSPERDSDFCLRSSTQFDEKPLFPLRPLTDDHHSSTKTAVLGSKRGFSDAMNGFSEGKFLIDSDNNPILSPRPGSNLGLNPGSTLEKAGAQQIKMKEAATAKEPHSANETRPSINCSANNSNSAPATKAQVVGWPPIRSFRKNSLATNSKNNEEVDEKVGGGALFVKVSMDGAPYLRKVDLNNYSTYPELSSALEKMFSCFTISQCGSHGILGREMLNETKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIETCKRLRIMKSSDAIGLAPRAVEKSKSRT 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2797g00011 363 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 66 350 IPR003311 GO:0005634|GO:0006355
Vium2797g00011 363 ProSiteProfiles PB1 domain profile. 243 345 IPR000270 GO:0005515
Vium2797g00011 363 FunFam Auxin-responsive protein 238 355 - -
Vium2797g00011 363 Pfam AUX/IAA family 71 354 IPR033389 -
Vium2797g00011 363 Gene3D - 239 357 - -
Vium2797g00011 363 SUPERFAMILY CAD & PB1 domains 241 344 - -
Vium2797g00011 363 MobiDBLite consensus disorder prediction 186 208 - -
Vium2797g00011 363 MobiDBLite consensus disorder prediction 176 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2797g00011 Vium-Chr2797 106433 112418 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2797g00011 203 348 B3 DNA Binding Superfamily AT5G20730 30.128 1.49e-08 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vium2797g00011 AUX_IAA 3e-92 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2797g00011 K14484 - gmx:100783314 602.823