Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2797g00009 ATGGGTACTGGTTGGAGGAGAGCCTTCTGCACCCGCGACCCAGCTTCTACCATATCGGATAAACAGCCCGGAAGCCCAAGCCCAAGCCCCAGCCCGAGAAGCTGTGCCCGCTTGGGTTTTCTCTCCGGAGGGAGCAACCCTTCCACCCCACGCTTGCGGTGCACAACTACACCAGAATCTGCTTCTCAAACAGTTACTGTCAACGAAAGCCCCAGAGTTCAAAGCAAGAACACCTCCAGAACAACCAAGTCTCCCAAAACGCTTGCTGTCTCAAATCCATCTTCACCGCGTTCTCCTCTCAAGCTCTCCCTCTTCAAGAACAGTTTCAAATTCAGGAGTAGCTGTGGAATTTGCTTGAACAGCGTGAAGACGGGACAGGGTACGGCTATTTACACTGCGGAATGTGGTCACGCGTTTCATTTCCCGTGTATCGCAGCGCATGTGCGCAAACATGGTAGCCTGGTGTGCCCCGTCTGCAACGCCACGTGGATGGACGTCCCACTACTCGCGGCGCACAAGAACCTCGCTGCGCAATCCGCCACGAAAAATGACGTCGCTCAGAGGACCACCGAAAACACCAATGCCAACGTCAAAAAGCCAACAGAAAACACATCCCCCGTTTTCAAGACCTACAGCCAGGTGGAGACCCCACCCAAACATACAGATTCGGTTCGGTCCTACGACGACGACGAGCCACTCCTCTCTCCCACCTCGGGCGGAAGGATCATTCCTATTCCCGAAGCCGACGAGAATGTCGAAGAAGACGACGAAGAAGAAGACGCCGGGGAGTTCCAGGGCTTTTTCGTCAACACCAAGAACTCGTCCTCCTCCAAATCATACTCCGATTCCTTCCAAACAACTGACGGAGATTCCAGAACGGTTCAGGTGAAACTCATGCCGGAGTGCGCCGTTATCTCGGCTTCCCGAACGCACGAGACCTACGCGTTGGTGTTGAAAGTCAAGGCTCCGCCTCCACCATCTCCACCGCGGAGCAGCACGGCGCCATCGCAACGTGCGCCGATAGATCTCGTCACTGTGCTGGACGTTGGTGGAAACATGACCGGAGCGAAGCTGCACATGCTAAAGCGCGCGATGCGTTTGGTTGTCTCATCGCTTGGCCCCGCCGACAGGCTCTCAATCGTCGCTTTCTCAGCCACTTCGAAACGGCTATTGCCTCTGCGCAGAATGACGGCCCAAGGTCAGCGCGTGGCTCGACGCATAGTTGACCGGCTCGTGGTAGGTCAAGGCTCGAGCGTAGGCGAGGCGTTGAGGAAGGCGACGAGAGTGTTAGAGGATCGCAGAGAGAGAAACCCGGTGGCGAGCGTGATGCTGTTATCGGACGGTCAAGAAGAGAGGGTTCAGAATCAGAGGGGTAACAGTAGTGGTCAGAGGAAGGCTTCGAGTCACGTGTCGTCGACGCGGTTCGCGCATATCGAGATTCCGGTTCACGCTTTTGGGTTCGGAGCGAAAAGCGGTTTCAGCCAGGAACCGGGGGAGGAGGCGTTCGCGAAGTGCGTGGGTGGGCTTCTGAGCGTGGTGGTGCAGGATTTGAGGATTCAAGTGGGCTTTGAGTCAGAGGCGGTGGAGATGAGCGCGATTTACTCGTGCAGTGGAAGGCCAAGTCTGCTGAGCTCAGGGGCGGTGCGGCTGGGCGACTTGTACGCGGAGGAAGAGAGGGAGCTGCTGGTGGAGTTGAGAGTTCCCGCGTCGTCAGGACATGGGACCCACCACGTGATGGCTGTACGGTGCCTCTATAAGGACCCTGCTAGCCAGGAGATCGTATACGGTAGGGAGCAGGGTCTTCTGGTGCCGCCGCCTCAGAGCCTGCGTTGTTCCGGTACTAGGATCCAGAGGCTCAGGAATCTCTTCATAACTACCCGAGCCATTGCAGAGTCCAGGAGGCTTCTTGAGCATAACGCTGACTTCACCAGCGCGCATCATTTGCTTGCCTCAGCGCGTGCACTTCTCATGCACTCCAACGCCGCTTCGGCGGATGACTACATGCGCGCCTTGGAGGCTGAGCTGGCAGAGCTTCATTGGCGAAGACAGCACGAGCAGGTTCAGGTTCAGCAACAGCAGCAAAGTGTGCAACAGCGGAGAAGAGGGAGTGAGAGAGAGGTGACTTTGGTGGACGAGAATGGTGAGCCGCTTACACCGACGTCGGCTTGGAGAGCCGCCGAGAAGCTGGCTAAGGTGGCGATGATGAAGAAGTCTTTGAACAGAGTCAGCGACTTGCACGGCTTCGAAAACGCTAGGTTTTAA 2262 0.5676 MGTGWRRAFCTRDPASTISDKQPGSPSPSPSPRSCARLGFLSGGSNPSTPRLRCTTTPESASQTVTVNESPRVQSKNTSRTTKSPKTLAVSNPSSPRSPLKLSLFKNSFKFRSSCGICLNSVKTGQGTAIYTAECGHAFHFPCIAAHVRKHGSLVCPVCNATWMDVPLLAAHKNLAAQSATKNDVAQRTTENTNANVKKPTENTSPVFKTYSQVETPPKHTDSVRSYDDDEPLLSPTSGGRIIPIPEADENVEEDDEEEDAGEFQGFFVNTKNSSSSKSYSDSFQTTDGDSRTVQVKLMPECAVISASRTHETYALVLKVKAPPPPSPPRSSTAPSQRAPIDLVTVLDVGGNMTGAKLHMLKRAMRLVVSSLGPADRLSIVAFSATSKRLLPLRRMTAQGQRVARRIVDRLVVGQGSSVGEALRKATRVLEDRRERNPVASVMLLSDGQEERVQNQRGNSSGQRKASSHVSSTRFAHIEIPVHAFGFGAKSGFSQEPGEEAFAKCVGGLLSVVVQDLRIQVGFESEAVEMSAIYSCSGRPSLLSSGAVRLGDLYAEEERELLVELRVPASSGHGTHHVMAVRCLYKDPASQEIVYGREQGLLVPPPQSLRCSGTRIQRLRNLFITTRAIAESRRLLEHNADFTSAHHLLASARALLMHSNAASADDYMRALEAELAELHWRRQHEQVQVQQQQQSVQQRRRGSEREVTLVDENGEPLTPTSAWRAAEKLAKVAMMKKSLNRVSDLHGFENARF 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2797g00009 753 MobiDBLite consensus disorder prediction 444 468 - -
Vium2797g00009 753 ProSiteProfiles Zinc finger RING-type profile. 115 160 IPR001841 -
Vium2797g00009 753 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 114 748 - -
Vium2797g00009 753 MobiDBLite consensus disorder prediction 1 96 - -
Vium2797g00009 753 SUPERFAMILY RING/U-box 108 165 - -
Vium2797g00009 753 SUPERFAMILY vWA-like 340 518 IPR036465 -
Vium2797g00009 753 MobiDBLite consensus disorder prediction 41 96 - -
Vium2797g00009 753 MobiDBLite consensus disorder prediction 182 290 - -
Vium2797g00009 753 Gene3D von Willebrand factor, type A domain 342 512 IPR036465 -
Vium2797g00009 753 SMART ring_2 115 159 IPR001841 -
Vium2797g00009 753 ProSiteProfiles VWFA domain profile. 342 488 IPR002035 -
Vium2797g00009 753 MobiDBLite consensus disorder prediction 249 263 - -
Vium2797g00009 753 MobiDBLite consensus disorder prediction 689 709 - -
Vium2797g00009 753 MobiDBLite consensus disorder prediction 267 290 - -
Vium2797g00009 753 Pfam von Willebrand factor type A domain 343 449 IPR002035 -
Vium2797g00009 753 Pfam RING-like zinc finger 115 144 IPR001841 -
Vium2797g00009 753 SMART VWA_4 340 529 IPR002035 -
Vium2797g00009 753 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 213 IPR013083 -
Vium2797g00009 753 CDD vWA_C3HC4_type 341 514 - -
Vium2797g00009 753 MobiDBLite consensus disorder prediction 182 220 - -
Vium2797g00009 753 MobiDBLite consensus disorder prediction 448 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2797g00009 Vium-Chr2797 79466 82716 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2797g00009 107 262 C3H Transcription Factor Family AT3G03550 25.316 2.84e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2797g00009 - - gmx:100782780 1191.41