Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2793g00002 ATGGCAAAGATGCTGGGTGTCTTGCTCATGATTGGAGCAATGATGTTCGGAGTAAGAGCTGAGCCAACGGAAGATAAACAAGCATTGCTTGATTTCCTTCACAACATTAGCCACTCTCATCATCTGATCAACTGGAACAAGAGCTCTTCTGTGTGCAAAAGTTGGATAGGAGTGACCTGCAACTCTGAGCAATCACATGTTATTGCCCTCCAACTGACCAGAACTGGATTGAGTGGTCGAATCCCACCCAACACTCTTAGCCGTCTCTCAGCGCTCCAAACTGTGAGTCTAGCCTCAAATAGCATAACTGGTTCTTTCCCTTCTGATTTCTCTCAGCTAAATAACTTGATCTATCTGTATCTCCAATTCAACAAATTTTCTGGTCCATTGCCATCAGACTTTTCAGTATGGAAGAATCTTAGTATTGTCAATTTGTCCAACAATTCTTTTAATGGGAGCATCCCATTTTCACTTTCAAATTTGACTCATCTCTCTTCTTTAGTTCTAGCCAACAACACCCTTTCGGGTGACATTCCTGATCTCACTATCCCTACCCTGCTGGAGCTGAATTTTGCCAACAATAACCTTAGTGGGGTTGTGCCCGAATCGTTGGAGAGATTTCCAAGGGGCGCATTTTCTGGTGGTAGAAGTGGACAACAAGTGAAGTCTCAGAAAGGAGAAGCATCCAGGAAAAAGGAAGGTTCTGAAAGTCGAGACAACAACAGAATTGTTTTCTTTGAGGGTTGCACTCTTGCATTTGACTTGGAGGACTTGTTGAGAGCATCTGCTGAAGTGCTTGGAAAGGGCACGTTTGGGACAGTGTATAAGGCTGCTCTAGAAGACGTAACAACCGTGGCAGTGAAAAGATTGAAGGATGTCATTGTCGGAAAACGCGAGTTTGAACAACAGATGGAGATGGTCGGGAGGATTAGGCACGATAATGTGGCTGCTTTAAGGGCATATTACTATTCAAAGGAGGAGAAACTTATGGTATATGATTACTACGAACAGGGCAGTGTGTCTTCAATGTTGCATGGCAAAAGAGAAGGAAGTAGAGTTTCTTTAAACTGGGATAGCCGTTTGAAAATAGCAATTGGAGTAGCAAGAGGCATTGCTCACATCCATGCTCAACAAGGAGGAAAACTCCTCCATGGAAACATAAAGTCCTCTAACATCTTCCTCAACCCAAGAGGATATGGTTGTGTATCTGACATTGGTCTTGCAACACTGATAAATCCAGCAACGAGAACAACAGGATACCGTGCCCCAGAAGCCACGGACACCAGAAAATCGGTAGCCGCATCTGATGTCTATAGTTTTGGGGTGCTGCTACTTGAGCTTCTAACTGGGAGGTTTCCCTTACATGCCAAAGGAGGTGAGGAAGTTGTGCACTTGGTTAGATGGGTGAATTCAGTGGTTAGAGAGGAGTGGACTGCAGAAGTGTTTGATGTGGAGTTGCTGAGGTATCCTAATATTGAGGAGGAAATGGTTGAGATGCTGCAAATAGGGATGGCATGTGTTGTGAGAACACCAGATCAGAGGCCAAAAATTGGTGATGTGGTGAGAATGGTGGAGGAAATTCGTAGGGTAAATGCCGAAAATAGATCATCCACTGAATCAAGGTCAGAAGGTTCCACTCCAACCCCTCATTCCATTGAGATACCTTCAACCTCTTTTGCATATTGA 1686 0.4419 MAKMLGVLLMIGAMMFGVRAEPTEDKQALLDFLHNISHSHHLINWNKSSSVCKSWIGVTCNSEQSHVIALQLTRTGLSGRIPPNTLSRLSALQTVSLASNSITGSFPSDFSQLNNLIYLYLQFNKFSGPLPSDFSVWKNLSIVNLSNNSFNGSIPFSLSNLTHLSSLVLANNTLSGDIPDLTIPTLLELNFANNNLSGVVPESLERFPRGAFSGGRSGQQVKSQKGEASRKKEGSESRDNNRIVFFEGCTLAFDLEDLLRASAEVLGKGTFGTVYKAALEDVTTVAVKRLKDVIVGKREFEQQMEMVGRIRHDNVAALRAYYYSKEEKLMVYDYYEQGSVSSMLHGKREGSRVSLNWDSRLKIAIGVARGIAHIHAQQGGKLLHGNIKSSNIFLNPRGYGCVSDIGLATLINPATRTTGYRAPEATDTRKSVAASDVYSFGVLLLELLTGRFPLHAKGGEEVVHLVRWVNSVVREEWTAEVFDVELLRYPNIEEEMVEMLQIGMACVVRTPDQRPKIGDVVRMVEEIRRVNAENRSSTESRSEGSTPTPHSIEIPSTSFAY 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2793g00002 561 MobiDBLite consensus disorder prediction 211 235 - -
Vium2793g00002 561 SUPERFAMILY L domain-like 28 206 - -
Vium2793g00002 561 ProSitePatterns Protein kinases ATP-binding region signature. 266 297 IPR017441 GO:0005524
Vium2793g00002 561 Gene3D Phosphorylase Kinase; domain 1 224 334 - -
Vium2793g00002 561 FunFam Probable inactive receptor kinase RLK902 22 182 - -
Vium2793g00002 561 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 335 539 - -
Vium2793g00002 561 Gene3D Ribonuclease Inhibitor 22 212 IPR032675 -
Vium2793g00002 561 Pfam Protein kinase domain 263 521 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2793g00002 561 MobiDBLite consensus disorder prediction 531 561 - -
Vium2793g00002 561 PANTHER OS05G0588300 PROTEIN 8 537 - -
Vium2793g00002 561 MobiDBLite consensus disorder prediction 537 561 - -
Vium2793g00002 561 ProSiteProfiles Protein kinase domain profile. 260 527 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2793g00002 561 FunFam pollen receptor-like kinase 1 228 334 - -
Vium2793g00002 561 Pfam Leucine rich repeat N-terminal domain 23 61 IPR013210 -
Vium2793g00002 561 Gene3D Transferase(Phosphotransferase) domain 1 335 547 - -
Vium2793g00002 561 Pfam Leucine rich repeat 70 126 IPR001611 GO:0005515
Vium2793g00002 561 SUPERFAMILY Protein kinase-like (PK-like) 264 525 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2793g00002 Vium-Chr2793 2768 5768 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2793g00002 7 549 Receptor kinase-like Gene Family AT5G53320 52.007 0.0 585
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vium2793g00002 Pkinase 3.9e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2793g00002 - - gmx:100810095 868.611