Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2793g00001 ATGGCAAAGATGCTGGGTGTCTTGCTCATGATTGGAGCAATGATGTTCGGAGTAAGAGCTGAGCCAACGGAAGATAAACAAGCATTGCTTGATTTCCTTCACAACATTAGCCACTCTCATCATCTGATCAACTGGAACAAGAGCTCTTCTGTGTGCAAAAGTTGGATAGGAGTGACCTGCAACTCTGAGCAATCACATGTTATTGCCCTCCAACTGACCAGAACTGGATTGAGTGGTCGAATCCCACCCAACACTCTTAGCCGTCTCTCAGCGCTCCAAACTGTGAGTCTAGCCTCAAATAGCATAACTGGTTCTTTCCCTTCTGATTTCTCTCAGCTAAATAACTTGATCTATCTGTATCTCCAATTCAACAAATTTTCTGGTCCATTGCCATCAGACTTTTCAGTATGGAAGAATCTTAGTATTGTCAATTTGTCCAACAATTCTTTTAATGGGAGCATCCCATTTTCACTTTCAAATTTGACTCATCTCTCTTCTTTAGTTCTAGCCAACAACACCCTTTCGGGTGACATTCCTGATCTCACTATCCCTACCCTGCTGGAGCTGAATTTTGCCAACAATAACCTTAGTGGGGTTGTGCCCGAATCGTTGGAGAGATTTCCAAGGGGCGCATTTTCTGGTAACAACCTTGCTTCTTCACATGCTCTTTCTCCTTCTTTTCTTATTAAACCCCGAAATTCTCATCCAACAAGGAAAAAATCCAAAGGGCTGCGAGAACCAGCATTGTTGGGTGTCATTATTGGTGCTTGCGTGCTGGGAATTTCAGTGATAACAGCTTTTGTGATTGTGTGTTTCTATGAGAAAGGTGGTAGAAGTGGACAACAAGTGAAGTCTCAGAAAGGAGAAGCATCCAGGAAAAAGGAAGGTTCTGAAAGTCGAGACAACAACAGAATTGTTTTCTTTGAGGGTTGCACTCTTGCATTTGACTTGGAGGACTTGTTGAGAGCATCTGCTGAAGTGCTTGGAAAGGGCACGTTTGGGACAGTGTATAAGGCTGCTCTAGAAGACGTAACAACCGTGGCAGTGAAAAGATTGAAGGATGTCATTGTCGGAAAACGCGAGTTTGAACAACAGATGGAGATGGTCGGGAGGATTAGGCACGATAATGTGGCTGCTTTAAGGGCATATTACTATTCAAAGGAGGAGAAACTTATGGTATATGATTACTACGAACAGGGCAGTGTGTCTTCAATGTTGCATGGCAAAAGAGAAGGAAGTAGAGTTTCTTTAAACTGGGATAGCCGTTTGAAAATAGCAATTGGAGTAGCAAGAGGCATTGCTCACATCCATGCTCAACAAGGAGGAAAACTCCTCCATGGAAACATAAAGTCCTCTAACATCTTCCTCAACCCAAGAGGATATGGTTGTGTATCTGACATTGGTCTTGCAACACTGATAAATCCAGCAACGAGAACAACAGGATACCGTGCCCCAGAAGCCACGGACACCAGAAAATCGGTAGCCGCATCTGATGTCTATAGTTTTGGGGTGCTGCTACTTGAGCTTCTAACTGGGAGGTTTCCCTTACATGCCAAAGGAGGTGAGGAAGTTGTGCACTTGGTTAGATGGGTGAATTCAGTGGTTAGAGAGGAGTGGACTGCAGAAGTGTTTGATGTGGAGTTGCTGAGGTATCCTAATATTGAGGAGGAAATGGTTGAGATGCTGCAAATAGGGATGGCATGTGTTGTGAGAACACCAGATCAGAGGCCAAAAATTGGTGATGTGGTGAGAATGGTGGAGGAAATTCGTAGGGTAAATGCCGAAAATAGATCATCCACTGAATCAAGGTCAGAAGGTTCCACTCCAACCCCTCATTCCATTGAGATACCTTCAACCTCTTTTGCATATTGA 1872 0.4386 MAKMLGVLLMIGAMMFGVRAEPTEDKQALLDFLHNISHSHHLINWNKSSSVCKSWIGVTCNSEQSHVIALQLTRTGLSGRIPPNTLSRLSALQTVSLASNSITGSFPSDFSQLNNLIYLYLQFNKFSGPLPSDFSVWKNLSIVNLSNNSFNGSIPFSLSNLTHLSSLVLANNTLSGDIPDLTIPTLLELNFANNNLSGVVPESLERFPRGAFSGNNLASSHALSPSFLIKPRNSHPTRKKSKGLREPALLGVIIGACVLGISVITAFVIVCFYEKGGRSGQQVKSQKGEASRKKEGSESRDNNRIVFFEGCTLAFDLEDLLRASAEVLGKGTFGTVYKAALEDVTTVAVKRLKDVIVGKREFEQQMEMVGRIRHDNVAALRAYYYSKEEKLMVYDYYEQGSVSSMLHGKREGSRVSLNWDSRLKIAIGVARGIAHIHAQQGGKLLHGNIKSSNIFLNPRGYGCVSDIGLATLINPATRTTGYRAPEATDTRKSVAASDVYSFGVLLLELLTGRFPLHAKGGEEVVHLVRWVNSVVREEWTAEVFDVELLRYPNIEEEMVEMLQIGMACVVRTPDQRPKIGDVVRMVEEIRRVNAENRSSTESRSEGSTPTPHSIEIPSTSFAY 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2793g00001 623 Pfam Protein kinase domain 325 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2793g00001 623 Pfam Leucine rich repeat 70 126 IPR001611 GO:0005515
Vium2793g00001 623 Gene3D Phosphorylase Kinase; domain 1 286 396 - -
Vium2793g00001 623 SUPERFAMILY L domain-like 28 206 - -
Vium2793g00001 623 Gene3D Transferase(Phosphotransferase) domain 1 397 609 - -
Vium2793g00001 623 FunFam Probable inactive receptor kinase RLK902 22 182 - -
Vium2793g00001 623 Gene3D Ribonuclease Inhibitor 22 234 IPR032675 -
Vium2793g00001 623 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 397 601 - -
Vium2793g00001 623 MobiDBLite consensus disorder prediction 593 623 - -
Vium2793g00001 623 PANTHER OS05G0588300 PROTEIN 8 599 - -
Vium2793g00001 623 Pfam Leucine rich repeat N-terminal domain 23 61 IPR013210 -
Vium2793g00001 623 SUPERFAMILY Protein kinase-like (PK-like) 326 587 IPR011009 -
Vium2793g00001 623 MobiDBLite consensus disorder prediction 599 623 - -
Vium2793g00001 623 FunFam pollen receptor-like kinase 1 290 396 - -
Vium2793g00001 623 ProSitePatterns Protein kinases ATP-binding region signature. 328 359 IPR017441 GO:0005524
Vium2793g00001 623 ProSiteProfiles Protein kinase domain profile. 322 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2793g00001 Vium-Chr2793 2768 5769 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2793g00001 14 614 Receptor kinase-like Gene Family AT4G23740 54.984 0.0 671
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vium2793g00001 Pkinase 5e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2793g00001 - - gmx:100810095 1045.42