Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2788g00005 ATGGGTGAGTGGTTGAGAAATGCAAGGCCCTATCTGCTGTTATTGGCTGTTCAATTTGGTTCTGCTGGGATGTTCATATTTGCCATGGATGCTATAAAGAAGGGTATGAGCCATTACGTCTTCATTGTCTACCGTAATGCCATCGCCTCTGTTACTCTCGCTCCCTTCGCCTTTGTTCTTGAAAGGAAAGTTCGGCCGAAGATGACTGTTGGTATATTTTCAGAGATTATGGCACTGGCTTTCTTCGAGATAATACTGGATCAGTGTTTCGCTCTATTGGGCATGAAATTCACGTCAGCTTCTTTCCTGTCTGCTGTCATGAACTCCGCACCCTCTGTTACTTTTGTCATGGCTGTTATTCTGAGGTTGGAGCACATGAAGATGAAGGAGGTGACATGTCAAGCCAAATTGATTGGAACAATAGTAACTTTTGGAGGCACCTTGCTAATGGCACTTTACAAAGGCCCTGTGATCAGTGTGATGAAATCTTCAACAACCCATGCTGGCCAACCTCAGACTCTCAACAACCCTACCGCTAACCACTGGATCCTAGGAACATGTTTCCTCCTCATCGGTTGTGCAGGCTTCTCTGCGTTTTACATATTACAAACCATAACATTGAGAAAATACCCAACAGAGATGTCCCTGGCTACTTGGGTTTGCTTCGTAGGTGCACTTCAAAGCTCTGTTGTAGCAGCCATCGCAGAACGCCACCACCCTCATGCATGGGCCATTGGTTGGGATACACGACTCTTTGCTCCAGCTTATGCGGGAGTAGTTACATCAGGAGTTCAGTATTACATACAAGGCATGGTGATAAAATCGATGGGCCCAGTTATTGTGACTGCTTTTAATCCCCTTCGTATGATCATCATTACCACCTTGGCCTGCATCATTCTATCTGAGCAACTCTACCTTGGAAGTGTTATTGGAGCAATTGTTGTGGTTCTTGGGCTATATCTAGTTGTGTGGGGAAAAGCTAAAGAATGCCAGCGAAGAATGCCACCATCCCCTGCAAAGGATAACTTTCCAGAAGACCAACGACAGCTACCTGTTACTGCTCCTAGGAATGATAGCAATGATAATAAGGGTTAA 1095 0.4521 MGEWLRNARPYLLLLAVQFGSAGMFIFAMDAIKKGMSHYVFIVYRNAIASVTLAPFAFVLERKVRPKMTVGIFSEIMALAFFEIILDQCFALLGMKFTSASFLSAVMNSAPSVTFVMAVILRLEHMKMKEVTCQAKLIGTIVTFGGTLLMALYKGPVISVMKSSTTHAGQPQTLNNPTANHWILGTCFLLIGCAGFSAFYILQTITLRKYPTEMSLATWVCFVGALQSSVVAAIAERHHPHAWAIGWDTRLFAPAYAGVVTSGVQYYIQGMVIKSMGPVIVTAFNPLRMIIITTLACIILSEQLYLGSVIGAIVVVLGLYLVVWGKAKECQRRMPPSPAKDNFPEDQRQLPVTAPRNDSNDNKG 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2788g00005 364 SUPERFAMILY Multidrug resistance efflux transporter EmrE 44 154 - -
Vium2788g00005 364 SUPERFAMILY Multidrug resistance efflux transporter EmrE 231 327 - -
Vium2788g00005 364 MobiDBLite consensus disorder prediction 332 364 - -
Vium2788g00005 364 Pfam EamA-like transporter family 10 150 IPR000620 GO:0016020
Vium2788g00005 364 Pfam EamA-like transporter family 184 323 IPR000620 GO:0016020
Vium2788g00005 364 PANTHER WAT1-RELATED PROTEIN 10 334 IPR030184 GO:0016020|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2788g00005 Vium-Chr2788 69838 73524 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2788g00005 2 363 Nodulin-like Gene Family AT1G44800 42.308 1.92e-106 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2788g00005 - - gmx:102665912 648.662