Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2788g00004 ATGATTGTTGCAGATAAAGAGAAGCAGGTAGATAAGGAATTTCCATCTCTTCTCATTCAGAGAGAAAGATCGAGAGAGAATAAGATGCGTACGTGGTTCACTAATGCAAAGCCCTATCTGCTGTTATTGGCCGTTCAATTTGGCTCCGCCGGCATGTTCATTTTCGCCATGGATGCCATGAGAAAGGGCATGAGCCATTACGTCTTCACCGTCTACCGTAATCTCATCGCCTTTCTCACTCTCTCTCCCTTTGCATTTTTTCTTGAAAGGAAAGTTCGGCCCAAGATGACCGTTGGTATATTTTCAGAGATTACGGCACTGGCTTTCTTCGAGATAATACTGGATCAGTGTTTCGCTCTATTGGGCATGAAATTCACGTCAGCTTCTTTCCTGTCTGCTGTCATGAACTCCGCACCCTCTGTTACTTTTGTCATGGCTGTTATTCTAAAATTGGAACACATGAAGATGGAGGAGGCAACATGTAAAGCGAAAGTTATTGGAACAATAGTAAGTTTTGGTGGCACTTTGCTAATGGCACTGTACAAAGGCCCTGCACTTAGTGTTATGGGATCTTCAACCACCCAACCTCAGAACGTCAACAACCCCACTGGTAACCACTGGATCATAGGAACAGCTTTCCTCCTTATTGGTTGTGCAGGCTTTTCTGCCTTTTACATATTACAAGTCATAACATTGAGAAAATACCCAGCAGAGATGTCCCTGGCTACTTGGGTTTGCTTTGTCGGTGCCCTTCAAAGTTCTATCGTGGCATTCTTCGCAGAACACCACCACCCTCATGCCTGGTCCATTGGTTGGGATACACGATTCTTTGCTCCTGCTTACGCGGGAATAGTTTCATCCGGAGTTCAGTATTACATACAAGGCGTGGTGATCAAATCCATGGGCCCAGTTATTGTGACTGCTTTTAATCCCCTTCGTATGATCATCATTACCACCTTGGCCTGCATCGTCCTCTCTGAGAAACTCTACCTTGGAAGTATTATTGGAGCAGTAGTTGTGGTTCTTGGACTGTATCTTGTTGTGTGGGGAAAATCTAAAGAATGCCAGCAAAGGATAATGCCACCATCCCCTGCAAATGATATCCCTCCAGAAGATCAACGTCAGCTACCTGTCACAGCTCCTAGGAATGATAGCAATGATAATAATGCTTAA 1173 0.4459 MIVADKEKQVDKEFPSLLIQRERSRENKMRTWFTNAKPYLLLLAVQFGSAGMFIFAMDAMRKGMSHYVFTVYRNLIAFLTLSPFAFFLERKVRPKMTVGIFSEITALAFFEIILDQCFALLGMKFTSASFLSAVMNSAPSVTFVMAVILKLEHMKMEEATCKAKVIGTIVSFGGTLLMALYKGPALSVMGSSTTQPQNVNNPTGNHWIIGTAFLLIGCAGFSAFYILQVITLRKYPAEMSLATWVCFVGALQSSIVAFFAEHHHPHAWSIGWDTRFFAPAYAGIVSSGVQYYIQGVVIKSMGPVIVTAFNPLRMIIITTLACIVLSEKLYLGSIIGAVVVVLGLYLVVWGKSKECQQRIMPPSPANDIPPEDQRQLPVTAPRNDSNDNNA 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2788g00004 390 MobiDBLite consensus disorder prediction 360 390 - -
Vium2788g00004 390 Pfam EamA-like transporter family 209 348 IPR000620 GO:0016020
Vium2788g00004 390 Pfam EamA-like transporter family 37 179 IPR000620 GO:0016020
Vium2788g00004 390 PANTHER WAT1-RELATED PROTEIN 37 360 IPR030184 GO:0016020|GO:0022857
Vium2788g00004 390 SUPERFAMILY Multidrug resistance efflux transporter EmrE 72 182 - -
Vium2788g00004 390 SUPERFAMILY Multidrug resistance efflux transporter EmrE 245 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2788g00004 Vium-Chr2788 53639 56809 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2788g00004 25 388 Nodulin-like Gene Family AT2G37460 40.659 2.72e-104 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2788g00004 - - gmx:102665912 618.616