Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2788g00003 ATGGGTGAGTGGTTGAGAAATGCAAGGCCCTATCTGCTGTTATTGGCTGTTCAATTTGGTTCTGCTGGGATGTTCATATTTGCCATGGATGCTATAAAGAAGGGTATGAGCCATTACGTCTTCATTGTCTACCGTAACGCCATAGCCTCTATAACTCTCGCTCCCTTCGCCTTTGTTCTTGAAAGGAAAGTTAGGCCCAAGATGACTTTCAGAGTATTTTCAGAGATTATGGCACTGGCTTTCTTCGAAATAATACTGGATCAGTGTTTCGCTCTGTTGGGCATGAAATTCACGTCTGCTTCTTTCTTATCTGCTGTCATGAACTCTGCTCCCTCTATTACTTTTGTCATGGCAGTCATTCTAGGAATGGAGCACATGAAAATTAAGGAGGTAGCATGTCAAGCGAAAGTGATTGGCACCGTAGTAACATTTGGAGGAACCTTGCTTATGGCACTGTACAAAGGCCCCGTCCTCAGTTTCATGAGATCTTCGACCAGCCATGCTAGCCAAACTGAGAACGTGACCAACCCCACTGGCAACCATTGGGTAATAGGAACAGTGTTCCTCCTCATTGGTTGTGCAGGCTTTTCTGCATTTTACATATTACAGGCCATAACATTGAGAAAATACCCAGCAGAGATGTCGTTGGCCACTTGGGTTTGCTTTGTAGGAGCACTTCAAAGCTCTATTGTTGCAATCTTCGCAGAACGCCACCACCCTCATGCTTGGTCCCTTGGTTGGGACACACGACTCTTTGCCCCTGCTTACGCGGGAATAGTTACATCAGGAGTTCAGTATTATATACAAGGCATGGTGATAAAATCCATGGGTCCAGTTATTGTGACTGCTTTCAATCCTCTGCGTATGATCATTGTTACGGGCTTGGCCTGCATCATCCTATCTGAGCAACTCTACCTTGGAAGTATAATTGGAGCAATAGTTGTTGTGCTGGGGCTTTATCTAGTAGTGTGGGGAAAAGCTAAAGAACGCAGAGGTCTGACGCCACCATCTCCTACAGAGGGTAACTTTCCCGAAGATCAACGACAGCTACCGGTCACAGCTCCAAGGAATGATAACGATGACAATAAGGCTTAA 1095 0.4548 MGEWLRNARPYLLLLAVQFGSAGMFIFAMDAIKKGMSHYVFIVYRNAIASITLAPFAFVLERKVRPKMTFRVFSEIMALAFFEIILDQCFALLGMKFTSASFLSAVMNSAPSITFVMAVILGMEHMKIKEVACQAKVIGTVVTFGGTLLMALYKGPVLSFMRSSTSHASQTENVTNPTGNHWVIGTVFLLIGCAGFSAFYILQAITLRKYPAEMSLATWVCFVGALQSSIVAIFAERHHPHAWSLGWDTRLFAPAYAGIVTSGVQYYIQGMVIKSMGPVIVTAFNPLRMIIVTGLACIILSEQLYLGSIIGAIVVVLGLYLVVWGKAKERRGLTPPSPTEGNFPEDQRQLPVTAPRNDNDDNKA 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2788g00003 364 Pfam EamA-like transporter family 184 323 IPR000620 GO:0016020
Vium2788g00003 364 Pfam EamA-like transporter family 10 150 IPR000620 GO:0016020
Vium2788g00003 364 PANTHER WAT1-RELATED PROTEIN 10 337 IPR030184 GO:0016020|GO:0022857
Vium2788g00003 364 MobiDBLite consensus disorder prediction 331 364 - -
Vium2788g00003 364 MobiDBLite consensus disorder prediction 340 356 - -
Vium2788g00003 364 SUPERFAMILY Multidrug resistance efflux transporter EmrE 44 154 - -
Vium2788g00003 364 SUPERFAMILY Multidrug resistance efflux transporter EmrE 220 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2788g00003 Vium-Chr2788 37237 40727 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2788g00003 3 363 Nodulin-like Gene Family AT2G37460 43.923 9.70e-110 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2788g00003 - - gmx:100811984 651.744