Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2787g00001 ATGTCCTCAACGAGGTTCGGATTCTTCTTCTGCCATTGTCAAAGGCTCTTCCCAGCACCATCTTCTTCTTCTTCCTTTGCTTTTTCACGCCCAAGACTCCTCTCTACCACTCCATATCCTCTCCAATATGAACTCATTATCAACCGTCCATCTTACCCTCGCCCACCAACTGTTCGACCAATTGACTCACCCGAACCGGACGACCCAGCTTCCGAGACTCGCCCCCAACTCGACAAGGCCCAGAGGAAGTACTATAACAAGCGGAGGAAAAGGATGTACGGCTCCGATTCCGACCAAGAGGGCGCTGGGCGCCGTGACGAAGGGTTCGTGGAGTTGAAGCCCGAGGTGGTGGAATTCCCCACGCTGCACAAGAGGGAGGAAGAGTTGTACTTCCACGACGCGTTTACGTATCCCTGGGAGAAGGACAAGCATTACAAGATGGTTTATCAGTTGGAGAAGAAGTACTTTCCTGATCAGTCGCTTGACAAGGCCTTTCTCCAAGCGGGACAGTCAAATAACAATAGTGCAAATGTTGATGTTAAAGCAGATGGACGGGGTGAGGGTAGGAAGAAAGATGTTGGGGTGGATGAAAAGTTGGTGTTTTTTGAGGGAAAAGAGAAGGGCGAGGGTGAGAGTGGAAGTAGAGAACTGAAGGAGAAGAAGGTTGAGGAGTTCTTCAAGGATTTGAAGAAGGTTCCTGGTAGTAACAAGGATGTTCAAGTTGGAGAGCCTTTTCTTTCGTCAAGGAGGACTGGTCTTCCTCCCGTGTGGGATAGTCCGCATGGCACTGTGGTTTTGGTCAACAAACCGAAAGGTTGGACTTCATTCACGGTTTGTGGAAAGCTGCGTCGCCTTGTCAAAGTGAAAAAGGTAGGTCATGCTGGGACCCTTGACCCAATGGCTACTGGTTTATTGATTGTGTGTGTTGGCAAAGCAACGAAACTGGTAGACAGATATCAAGGAATGATTAAGGGTTATAGTGGGGTTTTCCGCTTGGGGGAGGCTACTTCAACATGGGATGCTGACTCACCAGTCATTCAACGTGAGCCATGGGAGCATATCAAAGATGAGGATATAAAGAGGAATGCTTTGTCATTTTGTGGGGAGATCTGGCAAGTTCCTCCTATGTTCTCAGCTATTAAAGTTGGAGGTGAAAAGATGTATGAGAAAGCAAGGAGAGGAGAAAGCATTGAACTTTCACCTAGACGAATTTCAATTTTCCAGTTTGACACAGAGCGCAGCTTAAGTGACAGACAAAATTTGATTTTTAGAGTAACATGTTCCAAAGGGACATATATTCGGTCACTTTGTGCAGATTTTGGGAAGGCTCTTGACAGCTGTGCCCATTTAACTGCTCTCCGAAGAGATTCAATTGGGCAATATTCAGCAGACGATGCATGGGACTTTGAAGAGCTGGAAGAGGCTATCACTAAAAGCTATCTCTAA 1446 0.471 MSSTRFGFFFCHCQRLFPAPSSSSSFAFSRPRLLSTTPYPLQYELIINRPSYPRPPTVRPIDSPEPDDPASETRPQLDKAQRKYYNKRRKRMYGSDSDQEGAGRRDEGFVELKPEVVEFPTLHKREEELYFHDAFTYPWEKDKHYKMVYQLEKKYFPDQSLDKAFLQAGQSNNNSANVDVKADGRGEGRKKDVGVDEKLVFFEGKEKGEGESGSRELKEKKVEEFFKDLKKVPGSNKDVQVGEPFLSSRRTGLPPVWDSPHGTVVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIKRNALSFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIFQFDTERSLSDRQNLIFRVTCSKGTYIRSLCADFGKALDSCAHLTALRRDSIGQYSADDAWDFEELEEAITKSYL 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2787g00001 481 CDD PseudoU_synth_EcTruB 264 475 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vium2787g00001 481 SUPERFAMILY Pseudouridine synthase 263 476 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vium2787g00001 481 MobiDBLite consensus disorder prediction 90 107 - -
Vium2787g00001 481 Pfam TruB family pseudouridylate synthase (N terminal domain) 283 433 IPR002501 GO:0006396
Vium2787g00001 481 Pfam tRNA pseudouridylate synthase B C-terminal domain 434 477 IPR032819 -
Vium2787g00001 481 Hamap tRNA pseudouridine synthase B [truB]. 261 481 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vium2787g00001 481 PANTHER TRNA-PSEUDOURIDINE SYNTHASE 154 479 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vium2787g00001 481 FunFam tRNA pseudouridine synthase B 258 480 - -
Vium2787g00001 481 NCBIfam tRNA pseudouridine(55) synthase TruB 263 472 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vium2787g00001 481 Gene3D Pseudouridine synthase 258 480 - -
Vium2787g00001 481 MobiDBLite consensus disorder prediction 65 82 - -
Vium2787g00001 481 MobiDBLite consensus disorder prediction 50 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2787g00001 Vium-Chr2787 27878 33056 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2787g00001 264 455 NAC Transcription Factor Family AT3G57150 33.333 1.60e-20 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2787g00001 K03177 - gmx:100793939 721.85