Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2784g00002 ATGACAGGAGAGGTCGTGAACCCAAAAGCTTACCCTCTTGCAGATGCTCAACTCACAATAACAATACTTGATCTTGTTCAACAAGCTGCCAACTACAAGCAACTCAAAAAGGGTGCTAATGAAGCCACCAAGACTCTGAATAGAGGCATTTCTGAGTTCGTTGTCATGGCTGCAGACACCGAGCCTCTTGAAATTCTTCTCCATCTTCCTCTGCTTGCCGAGGACAAGAATGTTCCCTATGTATTTGTCCCATCAAAACAAGCACTTGGGCGAGCATGTGGTGTCACACGGCCAGTGATTGCATGTTCCGTAACAACTAATGAAGGAAGTCAACTGAAATCCCAAATTCAGCAACTAAAGGATGCTATTGAGAAGCTTTTGATCTGA 387 0.4444 MTGEVVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKDAIEKLLI 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2784g00002 128 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 23 111 IPR004038 -
Vium2784g00002 128 ProSitePatterns Ribosomal protein L7Ae signature. 73 90 IPR004037 GO:0042254|GO:1990904
Vium2784g00002 128 FunFam NHP2-like protein 1 homolog 1 128 - -
Vium2784g00002 128 Gene3D - 1 128 IPR029064 -
Vium2784g00002 128 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 4 125 - -
Vium2784g00002 128 Coils Coil 109 128 - -
Vium2784g00002 128 CDD SNU13 7 128 - -
Vium2784g00002 128 SUPERFAMILY L30e-like 6 126 IPR029064 -
Vium2784g00002 128 PRINTS High mobility group-like nuclear protein signature 38 48 IPR002415 GO:0003723|GO:0005730
Vium2784g00002 128 PRINTS High mobility group-like nuclear protein signature 21 36 IPR002415 GO:0003723|GO:0005730
Vium2784g00002 128 PRINTS High mobility group-like nuclear protein signature 82 94 IPR002415 GO:0003723|GO:0005730
Vium2784g00002 128 PRINTS High mobility group-like nuclear protein signature 8 21 IPR002415 GO:0003723|GO:0005730
Vium2784g00002 128 PRINTS Ribosomal protein L7A/RS6 family signature 70 80 IPR018492 -
Vium2784g00002 128 PRINTS Ribosomal protein L7A/RS6 family signature 80 94 IPR018492 -
Vium2784g00002 128 PRINTS Ribosomal protein L7A/RS6 family signature 35 49 IPR018492 -
Vium2784g00002 128 PRINTS Ribosomal protein L7A/RS6 family signature 54 67 IPR018492 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2784g00002 Vium-Chr2784 10343 12461 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2784g00002 35 124 Cytoplasmic Ribosomal Protein Gene Family AT2G47610 28.889 5.34e-06 42.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2784g00002 K12845 - csv:101222939 237.654