Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2783g00013 ATGAAGACAAGGATATGGCTTGGTACATTTGAAACAGCTGAGGATGCAGCCAGAGCCTATGATGAAGCAGCGAGGCTAATGTGTGGTGCCAGGGCAAGGACAAACTTCCCTTTCAACCCCAATGTGTCTCACACATCATCTTCTAGTTCAAAGCTTCTCTCGGCAACTTTGACTGCAAAACTTCACAGGTGCTACATGGCTTCTTTGCAAATGACAAGACAGGCTTTGGCATCATCAGGGTCTGAGAGAAAACCTTCAGTGCCAAATGCCACTCCCGCATCCCAACCAAAGAGTCTGACTGTGAAGAGTGAGCAAACTCATCAAGTGTTGCCACACAAGAGAGAAGAGGAGGATCAAGACTCAGAGGCCAACAGGGATGTTAAAATGGCCAGAAATGTTGAAAGTCTTCCTCTGCAGTTTAAGCCTCTTGAGGAAGATCACATAGAGCAAATGATTGAGGAGCTTCTTGATTATGGCTCTGTTGAGCTCTCTTCTGTCTTTTCACCCCAGGCCCTTTAA 519 0.4644 MKTRIWLGTFETAEDAARAYDEAARLMCGARARTNFPFNPNVSHTSSSSSKLLSATLTAKLHRCYMASLQMTRQALASSGSERKPSVPNATPASQPKSLTVKSEQTHQVLPHKREEEDQDSEANRDVKMARNVESLPLQFKPLEEDHIEQMIEELLDYGSVELSSVFSPQAL 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2783g00013 172 Gene3D AP2/ERF domain 1 38 IPR036955 GO:0003700|GO:0006355
Vium2783g00013 172 MobiDBLite consensus disorder prediction 75 106 - -
Vium2783g00013 172 SMART rav1_2 2 43 IPR001471 GO:0003700|GO:0006355
Vium2783g00013 172 Pfam AP2 domain 2 29 IPR001471 GO:0003700|GO:0006355
Vium2783g00013 172 MobiDBLite consensus disorder prediction 75 126 - -
Vium2783g00013 172 SUPERFAMILY DNA-binding domain 2 38 IPR016177 GO:0003677
Vium2783g00013 172 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 2 116 - -
Vium2783g00013 172 MobiDBLite consensus disorder prediction 107 126 - -
Vium2783g00013 172 ProSiteProfiles AP2/ERF domain profile. 1 37 IPR001471 GO:0003700|GO:0006355
Vium2783g00013 172 CDD AP2 2 37 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2783g00013 Vium-Chr2783 224819 225826 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2783g00013 1 172 AP2-EREBP Transcription Factor Family AT5G25190 55.814 5.20e-52 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium2783g00013 AP2 2.8e-05 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2783g00013 - - gmx:100785918 252.677