Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2783g00012 ATGGCCAGACCACAACAGCGTTACCGAGGTGTCCGACAAAGGCATTGGGGCTCTTGGGTCTCCGAAATTCGCCACCCCATATTGAAGACAAGGATATGGCTTGGTACATTTGAAACAGCTGAGGATGCAGCCAGAGCCTATGATGAAGCAGCGAGGCTAATGTGTGGTGCCAGGGCAAGGACAAACTTCCCTTTCAACCCCAATGTGTCTCACACATCATCTTCTAGTTCAAAGCTTCTCTCGGCAACTTTGACTGCAAAACTTCACAGGTGCTACATGGCTTCTTTGCAAATGACAAGACAGGCTTTGGCATCATCAGGGTCTGAGAGAAAACCTTCAGTGCCAAATGCCACTCCCGCATCCCAACCAAAGAGTCTGACTGTGAAGAGTGAGCAAACTCATCAAGTGTTGCCACACAAGAGAGAAGAGGAGGATCAAGACTCAGAGGCCAACAGGGATGTTAAAATGGCCAGAAATGTTGAAAGTCTTCCTCTGCAGTTTAAGCCTCTTGAGGAAGATCACATAGAGCAAATGATTGAGGAGCTTCTTGATTATGGCTCTGTTGAGCTCTCTTCTGTCTTTTCACCCCAGGCCCTTTAA 600 0.4783 MARPQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMCGARARTNFPFNPNVSHTSSSSSKLLSATLTAKLHRCYMASLQMTRQALASSGSERKPSVPNATPASQPKSLTVKSEQTHQVLPHKREEEDQDSEANRDVKMARNVESLPLQFKPLEEDHIEQMIEELLDYGSVELSSVFSPQAL 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2783g00012 199 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Vium2783g00012 199 MobiDBLite consensus disorder prediction 134 153 - -
Vium2783g00012 199 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Vium2783g00012 199 CDD AP2 6 64 IPR001471 GO:0003700|GO:0006355
Vium2783g00012 199 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Vium2783g00012 199 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Vium2783g00012 199 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Vium2783g00012 199 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Vium2783g00012 199 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677
Vium2783g00012 199 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 142 - -
Vium2783g00012 199 MobiDBLite consensus disorder prediction 103 133 - -
Vium2783g00012 199 MobiDBLite consensus disorder prediction 103 153 - -
Vium2783g00012 199 FunFam Ethylene-responsive transcription factor 2 6 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2783g00012 Vium-Chr2783 224819 226059 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2783g00012 1 199 AP2-EREBP Transcription Factor Family AT5G25190 61.809 8.83e-75 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vium2783g00012 AP2 6.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2783g00012 - - gmx:100785918 312.768