Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2783g00007 ATGGAAGGAAGAAGCAAGAAGGAGGCATACTTTTGTGACAGAGGAAGCATCTTCTCTTGTGCTGCAGAGGCACCTCCTAGTCCAAGCACTCCGCTTCAGCATCCACATGAGAAGAAACAGGTATCCGTTGAGGAAGAAGAGGAAGAAAATAAGGAGTCAAAGCATAGTGCTGTATTGGATCTAAATGTTTCAGGTGATGATTCTTGCAGTGCAGAAGCACTAGAACTGAATCTCATAACCTGTTTGGATGTGGGGTCATCATCCATTAGTGGCAATTCTTCTTCAGAAGACCCTCTTGCTTCTGATGCTGCAGAGCCAAGAGTCTTCTCTTGCAACTACTGCCACAGAAAGTTCTACAGTTCACAAGCACTTGGTGGGCACCAAAATGCACACAAGAGGGAGAGGTCAATAGCAAAGAGAGGGCACAGGTTTGGATCACAGATAATGGCCTTTGGCCTTCCCTTACTGCATAATAACACCCACTATGCAAGCATGGCTTCCCTGCCCCTTTATGGTGCTACAAATAGTAGAGGAGGACCTCTTGGAATTCAAGCACACTCCATGATCCAAAAGCCCTCTCATCACCACCACCACCATCATCATCATCGTGTGACTGGATTTGGAAACTCTTATGCACACCACCATGGTTGGTCAAGACCCATCATTGACCAACAACCTGGAATAGCAAAACTACCGGTGGCTGATTTTCACAGAACAAAATCAGCATTTTCATCATCACAAACAAGTGTTGGTAGGTTTGAAATGGCTAACACCCTGATGAATTCTTCAGCAAATAAGGAAATCGGTGGATGTGTGGCCGGTGCTGAAACTCGTCTGAAGAGTAATAATCAAGAAGAAATGAAGCACCTTGATTTATCCCTCAAGCTCTAA 891 0.4501 MEGRSKKEAYFCDRGSIFSCAAEAPPSPSTPLQHPHEKKQVSVEEEEEENKESKHSAVLDLNVSGDDSCSAEALELNLITCLDVGSSSISGNSSSEDPLASDAAEPRVFSCNYCHRKFYSSQALGGHQNAHKRERSIAKRGHRFGSQIMAFGLPLLHNNTHYASMASLPLYGATNSRGGPLGIQAHSMIQKPSHHHHHHHHHRVTGFGNSYAHHHGWSRPIIDQQPGIAKLPVADFHRTKSAFSSSQTSVGRFEMANTLMNSSANKEIGGCVAGAETRLKSNNQEEMKHLDLSLKL 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2783g00007 296 Gene3D Classic Zinc Finger 100 149 - -
Vium2783g00007 296 ProSiteProfiles Zinc finger C2H2 type domain profile. 109 136 IPR013087 -
Vium2783g00007 296 ProSitePatterns Zinc finger C2H2 type domain signature. 111 131 IPR013087 -
Vium2783g00007 296 MobiDBLite consensus disorder prediction 37 56 - -
Vium2783g00007 296 SUPERFAMILY beta-beta-alpha zinc fingers 106 136 IPR036236 -
Vium2783g00007 296 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 7 296 IPR044246 GO:0009788
Vium2783g00007 296 MobiDBLite consensus disorder prediction 22 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2783g00007 Vium-Chr2783 133027 134659 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2783g00007 27 296 C2H2 Transcription Factor Family AT5G10970 37.184 3.84e-42 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2783g00007 - - gmx:100809569 372.859