Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2783g00006 ATGGATGATTTCAGAAATGAGTTTCACAAAGGATTGCATGTTCTTGCTGTTGACGATGACTCAACCTGTCTAAAGATTCTGGAGACTATGCTACAAAAGCACAAATACCATGTAACAGCCACTAAAAATTCACAAACGGCATTGAATCTGTTGAGAGGAAACAAAAACGGGTTTGACCTTGTTATCAGCGACGTGCAAATGCCAGACATGGATGGATTTAAGTTGCTTGAGCTTGTGGGGCTTGAGATGGACCTACCTGTCATAATGATGTCGGTAGATGATGATTTTAAGATGGTGATGAAGGGAATTAAACATGGAGCTTGTGATTATCTTCTGAAACCTGTGAGACTTAAGGATGTAAAGAATATTTGGCAGCATGTTGCCAGAAGGAGGAAGATGGGTTCAAAGGAGCAGAATAGAAGCAGTAACCAAGAGAAAGCTAATACTGACAGCAATGAAAGAGGTTCAGTAGCAACAGGAAATTCAGATCAAAATGTAAAGTCTTCCCGAAAGAGGAGGGATGAGGATGACTATGATAATGAGGACCAAGAGAATGACCATGACAATGAGGACTCATCATGTCATAAGAAAGCTCGAGTTGTTTGGAATGCAGAACTGCACCACAAGTTTGTTTCTGCTGTCAATCAATTAGGCTTTGAAAAAGCTGTACCTAAAAAGATTCTTGACTTGATGAATGTTGAAAAGCTTACAAGGGAGAATGTGGCCAGCCACCTTCAGAAATATAGGCTTTATCTGAAAAAGATCAACTGTGCGGCGAACCGGCAGGCTAATATGGTTGCAGCATTAGGCACTACAGATCCATCCTTTCTGAGAATAGGTTCTCTGAGTGGTGTTGGACATTTGCAGTCATTGACTGGTTCTCAACAGTTTCATAACAGTACTTTCAGACCCTTTGGACCTGGTGGAATGGCTGGTAGATTGAACACTTCTGTTGGTGTGAATGTGCATGAAACTCTTCAGTTGGGTCATGCACAAAATTTTCACAAATCTATGCATGAACCATTCAAGTTTCAACCTGCTATAACTGGTGGCAATCAAAATAATGGTATTCAGGGAGTGCCATTGTCCACTGCTCTTGATCAATTTCAACATAATAAGGGTGTTGGTATTGCTGTTAGTCCGATTCAAAGCATTTCTCCTTTTATTGATGTTCAACCAAATTTTTCAGTGCCAAATAAACTCCCAGATCTGATACCAACATCAACAGTAGGTTGCTCACCCTCTCCTGTTTTGGACGTATCAAACAATGCTTTGGTATTGAAAGCTGATAGTGAAAACACACAAGGGGGTGGAATGTTGTTTGGTCAACCTTCATTAGCCTCTCAGAATTCTCAATTCTCACTCCCTTTGCTGGATCATGGTAGGTGCAGTGATATTTGGTCAAATACTGTTCAGTCATCAGGGACAAATTCTTACCCTGCAGGTGAAACTTTTCGAGTGAGGAATCTGAGTGGTGCTTCATCCATTACTTCACTGTCTAATCCATCCCATTATTCACTAAAAGATATGCATTCACAAGGAGTTCTTATTCCAAATAATTCTGGACAAATTACCAATAATGTGGTGCCATTTCAAGGAAACACAGACTTCAGTTTCTTTGATCCCTTACTGATGAAACCTGATGGAGTTACGGGATTGAGTGAAGAAAACACATTGAAACAACAACAGGGATACATCATGAACCATACCAAGTCTCAAAGCAATAGTGCCGCTAATAATCTTGGTTCCGTGGAAGAATTTGTCAGTTCAATGATGAAACAGGTGATTGTATTTGTTTCTAGTTTTGGTTTGTTATTGTAG 1821 0.4009 MDDFRNEFHKGLHVLAVDDDSTCLKILETMLQKHKYHVTATKNSQTALNLLRGNKNGFDLVISDVQMPDMDGFKLLELVGLEMDLPVIMMSVDDDFKMVMKGIKHGACDYLLKPVRLKDVKNIWQHVARRRKMGSKEQNRSSNQEKANTDSNERGSVATGNSDQNVKSSRKRRDEDDYDNEDQENDHDNEDSSCHKKARVVWNAELHHKFVSAVNQLGFEKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKKINCAANRQANMVAALGTTDPSFLRIGSLSGVGHLQSLTGSQQFHNSTFRPFGPGGMAGRLNTSVGVNVHETLQLGHAQNFHKSMHEPFKFQPAITGGNQNNGIQGVPLSTALDQFQHNKGVGIAVSPIQSISPFIDVQPNFSVPNKLPDLIPTSTVGCSPSPVLDVSNNALVLKADSENTQGGGMLFGQPSLASQNSQFSLPLLDHGRCSDIWSNTVQSSGTNSYPAGETFRVRNLSGASSITSLSNPSHYSLKDMHSQGVLIPNNSGQITNNVVPFQGNTDFSFFDPLLMKPDGVTGLSEENTLKQQQGYIMNHTKSQSNSAANNLGSVEEFVSSMMKQVIVFVSSFGLLL 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2783g00006 606 MobiDBLite consensus disorder prediction 129 194 - -
Vium2783g00006 606 MobiDBLite consensus disorder prediction 140 165 - -
Vium2783g00006 606 FunFam Two-component response regulator 193 256 - -
Vium2783g00006 606 SUPERFAMILY Homeodomain-like 194 254 IPR009057 -
Vium2783g00006 606 Gene3D - 193 256 - -
Vium2783g00006 606 SMART REC_2 12 124 IPR001789 GO:0000160
Vium2783g00006 606 ProSiteProfiles Response regulatory domain profile. 13 128 IPR001789 GO:0000160
Vium2783g00006 606 PIRSF RR_ARR_type-B 1 597 IPR017053 GO:0003677|GO:0003700|GO:0009736
Vium2783g00006 606 PANTHER TWO-COMPONENT RESPONSE REGULATOR 12 368 IPR045279 GO:0009736
Vium2783g00006 606 Pfam Myb-like DNA-binding domain 199 249 IPR001005 -
Vium2783g00006 606 NCBIfam myb-like DNA-binding domain, SHAQKYF class 197 250 IPR006447 GO:0003677
Vium2783g00006 606 Pfam Response regulator receiver domain 14 121 IPR001789 GO:0000160
Vium2783g00006 606 CDD REC_typeB_ARR-like 14 128 - -
Vium2783g00006 606 Gene3D - 12 150 - -
Vium2783g00006 606 SUPERFAMILY CheY-like 10 139 IPR011006 -
Vium2783g00006 606 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 196 253 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2783g00006 Vium-Chr2783 95905 99865 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2783g00006 6 594 Response Regulator Gene Family AT2G25180 41.368 5.53e-116 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vium2783g00006 Response_reg 1.6e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2783g00006 - K14491 var:108336977 1138.25