Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2783g00003 ATGAGTCGTTCGATTCAACTTCGTGAAAGATCGAGTTGCAGACCCCGCTATAACTTTGATGAATCAGACGAGGAAGATCAAGTTATTTTCCATACAGAACATGGAAAATATGCAGAAAATGTGAAAGTTGATGGAACTGATGCCAATGTGGGCGGCTTGGTTGAAGGTCTTCCTGGAAGCTCCCGTCAAAGGAAGCGAAAAGATGATTCTAACGATTCAGTTGTTCTCCCTAGGAAACGAGGGAGACCTAGAAAAAACACTACGAAATGTGATTCAACTGACACTAATGTTAATAGTTTTGCTGATCGGCTTCGTGAAAGATCAACTATAAAGAAGCCAACTTATGTTCTTGACGAGTTAGAAGAAGATGTAGATATTTTCCCCAGCACACATGGGGACCCTACAGAAGGCATAGTCAAAATTGAAAGAAGTGACACTGTTAGCCCACTCAGTGGTATTGAAAAGATATTAGATTGTGAGATGCGTCCTGTGCTGGCTGCTGAAAGTGATGCACAAAAGTTGGAGTCGAAACAAAATTCTGTCAAGCACTATCTTTTGTTCACCAGTTACACCTTTTTTCTCTTTAGGGTTCCAGAAGAAGAGTTTTTGAAGGCTTTCAAGACTCAGCCAGGTCTAAAGATCAGAATAAACAGCTTCCATCGTCGTATCGAATCAGCCAAGAATTTTAACGAAGATTTTGTTGCCATTAGATCCGAATGGACTATGGTTGATAGAATACTTGCTTGCAGACAAGGTCATGCAGACGATAAGAAGGCATACCTTGTAAAGTGGAAAGAGCTCCCGTATGACGAGTGCCACTGGGAGCTTGAATCAGATATTTCTGCTTTTCAAGCAGAAATAGAAAGATTCAACAACTTTCAGTCTAGAACAAGGAGGGTTTTGGATGCTTCTGCATCAGAAAATCTGCAGAAAGAATTTCTTCCGTATGAAAGCAGCCCCCAGTTTCTTTCAGGGGGTTCACTGCATCCATATCAACTTGAAGGATTGAACTTCTTACGATTTTCATGGTCCAAGCAAACTCATGTTATACTTGCTGATGAAATGGGACTTGGAAAAACCATTCAGAGCATTGCGTTTTTAGCATCGCTCTTTGAAAGTAACGTTTCACCACACTTGGTGATTGCTCCCCTCTCCACGTTGCGAAACTGGGAGCGTGAATTTGCAACGTGGGCACCTCAGATGAATGTTGTTATGTATTTTGGATCTGGCAACGCTCGTGATTTGATACGAGAGTATGAGTTTTACTTTCCCAAGAACCAAAAGGGGTTCCAGAGGAAGAAATCTAAACAGCTTGTTGATGAAACCAAGCAAGGAAGAATAAAGTTTGATGTTCTTTTGACATCATATGAGATGATAAATTGTGATTTATTAGCACTAAAGCCCATAAAGTGGGAGTGCATGATAGTTGATGAGGGTCACCGTCTGAAAAACAAAAATTCTAAGTTGTTTTCTTCGTTGACCCAACTTTCCAGCAAACATCGTGTGCTTTTGACTGGAACTCCTCTTCAGAACAATTTGGATGAACTTTTTATTCTGATGCACTTCCTTGATGCTGGAAAGTTTGGAAGTTTAGAGGAGTTTCAGGAAGAATTTAAGGATATCAATAGAGAGGAGCAGATTCTGAGACTACATAAAATGTTGGCACCGCATCTTTTGCGAAGGATGAAGAAAGATGTGATGACAGAACTACCTCCAAAAAAGGAACTTATTTTACGTGTTGAATTATCCAGTCTGCAGAAAGAATACTACAAGGCAATTCTGACTCGGAATTATCCGATATTAACCCGCCAAGCTGGTGTACATATTTCTCTTATCAACGTTGTTATGGAACTGCGTAAGCTCTGCTGCCATCCCTTTATGTTTGATGGATTTCAACCTGATCTTAATATTAATGATGAAAAAGCTCCACTTGAAACTTTTACAGCTAAAGTATTTAATTTTCTTGAGTTTAAAGTCATTAACATTGACATCTTTTGTTGGTTAATATTAAGGTTTTGTTACTATTATTATTTTCTTTCTTTTCTGTTTCATAGCCACTTGCTTGAATCCTCCGGGAAGTTGCAACTGTTAGACAAGATGATGGTGAAACTTAAAGAGCAAGGTCATAGAGTCCTTATATATTCCCAATTTCAGAAAATGCTGGACTTGCTTGAAGATTACTGCTGTTACAATAATTGGCAATTTGAGAGGATAGATGGGAAGGTTGGAGGAGCTGAAAGACAAGTAAAGATAGATCGGTTTAATGCTGAAGATTCTTCAAGATTTTGTTTTCTTCTTTCTACAAGAGCTGGGGGATTAGGGATAAACCTTACTACAGCGGACACAGTCATTATATATGACAGTGATTGGAATCCTCATGCTGATTTGCAAGCCATGGCCCGGTCGCACCGCCATGGACAAAAAAAGAAGGTGATGATTTATAGGCTCATAACAAGAGGAACAATTGAAGAAAGGATGATTCAAATGACAAAGAAGAAAATGGTGTTAGAACACCTTGTTGTAGGGAGGCTACAGGCTGAAAACATTAAGCAGGAAGAGTTAGATGATATCGTAAGGTATGGCGCAGAGGAGTTATTTGCTGATGAAAATGATGAGGCAAGCAAGTCTCGTCAAATTCATTATGATGATGATGCTATAGACAGATTGCTGGATCGTGATGGAGTTGGAGGTGAAGATGCTGGTTTGGATGGTGAAGATGAAGATGGATTTCTGAAGGCTTTTAAGGTGGCAAATTTCGAATACATAGACGAAGTTAAGCCAGCAGAGGAGGTGGCACAAAAAGAATCAAAGGAGAATCAATTCTCTGCTGCCAATTTGAAGAAATCAGCTTACTGGGATGGCTTGTTGAAAAAAGGATACGAACAGTGTAGAGTAGAGGATCTAAATGCCTTAGGCAAAGGGAAGCGAACCCGCACCAAATGGCTGGGGGAAGGTTGTAGTAATTGGGGAGATATAAGCTCCGATGGTGAAGATTATGAAGCGGATCATAGTGAAGATGATTCAAATTCATTTGAGACTCCTCCTACTAGAAGGTTGCAGAGAAAGAAATTACGCGGATTGTTAGTAGTGATGGAATTTCAATATCTGTCCTTGATTGTGATGTTAATTTTCTTTTACTCATTTACAGCAGAGAGCCCAGAGCCACTTCCTTTAATGGAAGGTCAAGGAAAATCGTTGAAAGTACTTGGTTTTAGTCAAAATCAAAGGGCTGATTTTCTTCAAATTTTGATGAGGTTTGGGGTTGGTGATTATGATTGGAAAGAGTTTGCTTCCAGGATGAAACACAAGAGTTATGAAGAAATCACGGAGTATGGCAAACTTTTTTTGTCTCATATTGCAGAAGATATTACTGATTCACCAACATTCACAGATGGCGTTCCAAAAGAAGGACTTCGAATACAAGATGTACTTGTAAGGATTGCACTTTTGAATTTGATATCAGAGAAAGTGAAGTTTGCATCAGAAAATCCTGGACTTGATCTTTTTTCAGCTGATATCTTAATACGCTACCCACGTTTGAAGGGTACAAATTTCTGGAAGACGGAGCATGATTTAGTGCTGCTGCAGGCCGTGTTGAAGCATGGCTATGCAAGGTGGCATGATATTATTAAGGATAAGGATCTGAAGATTGAGGAGGTCATCTGTCAGGAGTTGAATATTCCAGTTGCAGATGTATCAGTTCAAGTACAGTCTGACTCACGAAAGCTCTATGGTCCAAATATCACAAATGTGGAGTCTAGCACGAGCTTCAAGAAATCTAAGCAGAGTGATTTGTGTGGTTCCAGTGATCGTGGGAAGCAAACGCAGTCGCATCGTAAATCCGTCACGTGGGATCAGAATAAACAAATCCATAGAGCACATATTGAGTTTATCAAGAAAAGGCTTCGTCTCTTGGAAACAGGTCTCACCGCTGAGTGCCAGAATGAACGCTTAAGTGATCTCAGAGCAAATGAGGAAGAAAACAAACTATTTAAAGGCAAGTCCACGCGTGTTAATGTAAACAAAGTATATCGGTTTTGA 4041 0.3982 MSRSIQLRERSSCRPRYNFDESDEEDQVIFHTEHGKYAENVKVDGTDANVGGLVEGLPGSSRQRKRKDDSNDSVVLPRKRGRPRKNTTKCDSTDTNVNSFADRLRERSTIKKPTYVLDELEEDVDIFPSTHGDPTEGIVKIERSDTVSPLSGIEKILDCEMRPVLAAESDAQKLESKQNSVKHYLLFTSYTFFLFRVPEEEFLKAFKTQPGLKIRINSFHRRIESAKNFNEDFVAIRSEWTMVDRILACRQGHADDKKAYLVKWKELPYDECHWELESDISAFQAEIERFNNFQSRTRRVLDASASENLQKEFLPYESSPQFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFESNVSPHLVIAPLSTLRNWEREFATWAPQMNVVMYFGSGNARDLIREYEFYFPKNQKGFQRKKSKQLVDETKQGRIKFDVLLTSYEMINCDLLALKPIKWECMIVDEGHRLKNKNSKLFSSLTQLSSKHRVLLTGTPLQNNLDELFILMHFLDAGKFGSLEEFQEEFKDINREEQILRLHKMLAPHLLRRMKKDVMTELPPKKELILRVELSSLQKEYYKAILTRNYPILTRQAGVHISLINVVMELRKLCCHPFMFDGFQPDLNINDEKAPLETFTAKVFNFLEFKVINIDIFCWLILRFCYYYYFLSFLFHSHLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQKMLDLLEDYCCYNNWQFERIDGKVGGAERQVKIDRFNAEDSSRFCFLLSTRAGGLGINLTTADTVIIYDSDWNPHADLQAMARSHRHGQKKKVMIYRLITRGTIEERMIQMTKKKMVLEHLVVGRLQAENIKQEELDDIVRYGAEELFADENDEASKSRQIHYDDDAIDRLLDRDGVGGEDAGLDGEDEDGFLKAFKVANFEYIDEVKPAEEVAQKESKENQFSAANLKKSAYWDGLLKKGYEQCRVEDLNALGKGKRTRTKWLGEGCSNWGDISSDGEDYEADHSEDDSNSFETPPTRRLQRKKLRGLLVVMEFQYLSLIVMLIFFYSFTAESPEPLPLMEGQGKSLKVLGFSQNQRADFLQILMRFGVGDYDWKEFASRMKHKSYEEITEYGKLFLSHIAEDITDSPTFTDGVPKEGLRIQDVLVRIALLNLISEKVKFASENPGLDLFSADILIRYPRLKGTNFWKTEHDLVLLQAVLKHGYARWHDIIKDKDLKIEEVICQELNIPVADVSVQVQSDSRKLYGPNITNVESSTSFKKSKQSDLCGSSDRGKQTQSHRKSVTWDQNKQIHRAHIEFIKKRLRLLETGLTAECQNERLSDLRANEEENKLFKGKSTRVNVNKVYRF 1346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2783g00003 1346 MobiDBLite consensus disorder prediction 9 23 - -
Vium2783g00003 1346 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 563 865 IPR027417 -
Vium2783g00003 1346 SMART ultradead3 324 537 IPR014001 -
Vium2783g00003 1346 SUPERFAMILY Chromo domain-like 232 293 IPR016197 -
Vium2783g00003 1346 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 48 1289 - -
Vium2783g00003 1346 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 309 561 IPR027417 -
Vium2783g00003 1346 MobiDBLite consensus disorder prediction 1259 1285 - -
Vium2783g00003 1346 MobiDBLite consensus disorder prediction 997 1016 - -
Vium2783g00003 1346 Gene3D - 1141 1292 - -
Vium2783g00003 1346 CDD SF2_C_SNF 691 817 - -
Vium2783g00003 1346 SMART helicmild6 722 806 IPR001650 -
Vium2783g00003 1346 Pfam CHD subfamily II, SANT-like domain 1051 1170 IPR009462 GO:0003677|GO:0006338
Vium2783g00003 1346 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 696 857 IPR001650 -
Vium2783g00003 1346 MobiDBLite consensus disorder prediction 1 23 - -
Vium2783g00003 1346 ProSiteProfiles Chromo and chromo shadow domain profile. 241 296 IPR000953 -
Vium2783g00003 1346 Coils Coil 531 551 - -
Vium2783g00003 1346 Pfam Chromo (CHRromatin Organisation MOdifier) domain 242 292 IPR023780 -
Vium2783g00003 1346 Pfam CHD subfamily II, DUF1087 928 978 IPR009463 -
Vium2783g00003 1346 SMART chromo_7 239 295 IPR000953 -
Vium2783g00003 1346 MobiDBLite consensus disorder prediction 41 96 - -
Vium2783g00003 1346 Gene3D - 571 635 IPR027417 -
Vium2783g00003 1346 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 340 526 IPR014001 -
Vium2783g00003 1346 Gene3D - 320 570 IPR038718 -
Vium2783g00003 1346 Pfam Helicase conserved C-terminal domain 693 806 IPR001650 -
Vium2783g00003 1346 SMART DUF1086_2 1046 1174 IPR009462 GO:0003677|GO:0006338
Vium2783g00003 1346 Gene3D - 230 292 - -
Vium2783g00003 1346 Pfam SNF2-related domain 348 628 IPR000330 GO:0005524|GO:0140658
Vium2783g00003 1346 CDD CD2_tandem 239 292 - -
Vium2783g00003 1346 MobiDBLite consensus disorder prediction 60 79 - -
Vium2783g00003 1346 Gene3D - 673 899 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2783g00003 Vium-Chr2783 65712 76973 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2783g00003 447 858 RAD5 or RAD16-like Gene Family AT5G05130 26.132 5.58e-36 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vium2783g00003 SNF2_N 2e-63 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2783g00003 K11643 - gmx:100804203 1506.12