Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2783g00002 ATGGCAAACTTCCACCGTAACAACGTCGAGAACGTGGTCCTTGGCCACCACCGTTCCAAGAGCACCTCCGTCGCCGGTGGCCACTTCCGCCTATGGCACTCCCTCTCCACCACCTCCTTCCGCCGCCTGGTCTTCAATGCCGTCAGCTGCGGCGCCAGCTCCCGCTACGCCGAGAGATCGGACACGTCCTCCGAGAGACACTACCACCAACCGAAACAACAGCACCGGCACAAGACGAAGCCGAATAACGCGAAGTCGGAGAAGCTCTCGGATCTGCTGAACCTGGCCGAGGTCGAAGCTGACGCGGAAACGAAGAAGAAAGAGGACAAACTCGAGGAGCTGAAGAGCCTAGTGAAGGAGCTTCATAAGGAAGATGAGGAAGAGAAGGAAGAAGAATCAATGACGCGGAGAAGAGAAGCTGCTTCGAAAGTGAGGTTGCTAGCCAAAGAGGATTTGGAAGTTAGAGGGACGCTCGCGATGCTTGGAGCTATTCCTCCTCTCGCCGCAATGCTCGATGAATCCAAAAACGACGTCGATTCGCTCGTTGCTTCTCTCTACGCGCTGCTCAACCTCGGAATCGGAAACGACGCGAATAAAGCAGCTATTGTGAAAGTTGGGTCAGTTGAGAAGATGCTGAAGCTGATTGAATCTCCAGATGGTCTAGATTCTTCGGTTTCTGAAGCAATTGTTGCGAATTTCCTTGGACTTAGTGCGTTGGATTCGAATAAGCCCATAATTGGGTCTTCGGCTTCAATTTCTTTCTTAGTTAGAACCCTTCAGAGTTTAGATGACAAGAGTAGTCCCCAAGCCAAGCAAGATGCTTTACGGGCATTGTACAATCTTTCGATCTACCCAGCCAATGTTGCATTTGTTTTGGAAACAACTTTGGTTCTGTTTCTGGTGAATTCAATAGGGGACATGGAGGTAACTGAAAGAGCCCTTGCGATTCTCAGCAACTTGGTGTCGACCCGAGAGGGTAGAAAGGCGATTAGTGCAGTGCAAGATTCGATTCCGATCCTGGTGGATGTGTTGAATTGGACAGATTCACCAGAATGCCAGGAGAAGGCGTCCTACATTTTGATGGTTATGGCACACAGGTCTTATGGGGACAAACAGGCCATGATTGAGGCAGGGATTGCGTCATCACTGCTTGAGTTGTCCCTTTTGGGTACCACATTAGCTCAGAAAAGGGCATCAAGGATACTAGAAATTTTGAGGGTAGACAAAGGGAAACAGATTTCTGGGAGCTATGGCTTGGGTGCTGCTGTCTCTGCCCCTATTAGCGGCTCTTCGTCCGCGAAGCCGGACGACGGAGGGAGGGAGTGTTTTGACGAGGAGGAAGATATGATGAGTGAGGAGAAGAAAGCAGTGAAGCAACTAGTCCAACAGAGTTTGCAGAACAACATGAGGAAAATTGTAAAAAGGGCCAATTTGCCTCACGATATTGTGCCATCGGATCATTTTAAGTCACTCACCTCAAGTTCTACTTCAAAGAGCCTACCATTTTGA 1509 0.497 MANFHRNNVENVVLGHHRSKSTSVAGGHFRLWHSLSTTSFRRLVFNAVSCGASSRYAERSDTSSERHYHQPKQQHRHKTKPNNAKSEKLSDLLNLAEVEADAETKKKEDKLEELKSLVKELHKEDEEEKEEESMTRRREAASKVRLLAKEDLEVRGTLAMLGAIPPLAAMLDESKNDVDSLVASLYALLNLGIGNDANKAAIVKVGSVEKMLKLIESPDGLDSSVSEAIVANFLGLSALDSNKPIIGSSASISFLVRTLQSLDDKSSPQAKQDALRALYNLSIYPANVAFVLETTLVLFLVNSIGDMEVTERALAILSNLVSTREGRKAISAVQDSIPILVDVLNWTDSPECQEKASYILMVMAHRSYGDKQAMIEAGIASSLLELSLLGTTLAQKRASRILEILRVDKGKQISGSYGLGAAVSAPISGSSSAKPDDGGRECFDEEEDMMSEEKKAVKQLVQQSLQNNMRKIVKRANLPHDIVPSDHFKSLTSSSTSKSLPF 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2783g00002 502 Coils Coil 443 463 - -
Vium2783g00002 502 SUPERFAMILY ARM repeat 113 405 IPR016024 -
Vium2783g00002 502 MobiDBLite consensus disorder prediction 482 502 - -
Vium2783g00002 502 Gene3D - 80 438 IPR011989 -
Vium2783g00002 502 SMART arm_5 326 365 IPR000225 GO:0005515
Vium2783g00002 502 SMART arm_5 195 238 IPR000225 GO:0005515
Vium2783g00002 502 SMART arm_5 239 283 IPR000225 GO:0005515
Vium2783g00002 502 SMART arm_5 151 193 IPR000225 GO:0005515
Vium2783g00002 502 SMART arm_5 284 322 IPR000225 GO:0005515
Vium2783g00002 502 MobiDBLite consensus disorder prediction 55 90 - -
Vium2783g00002 502 MobiDBLite consensus disorder prediction 487 502 - -
Vium2783g00002 502 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 162 206 IPR000225 GO:0005515
Vium2783g00002 502 Coils Coil 93 131 - -
Vium2783g00002 502 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 23 502 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2783g00002 Vium-Chr2783 20245 23250 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2783g00002 130 409 U-box Gene Family AT1G67530 31.228 8.72e-31 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2783g00002 - - gmx:100788575 695.656