Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2780g00011 ATGTCAAGTTTCCCCAACACAGTGTCGGAAGGCCGGAGGTTTGGCAAGGCGCCGGAAAAATCCTCTTTTTCTCAGACTTGCAGTCTCTTGAGCCAGTTCTTGAAGGAGAAACGAGCTTCTGGTGATTCCACCCTTGGAATGGGTGGGAAAATGGAACCTAAAGCTAGTACGAAGGATTTGTTTGGCAGCCTGCAAAACTCAGATGGGGCTTTGAAACTAAGCGCTTCTGCCATGGATTTTCTTCCCCAGCTTGTGGAAAACCCCTGCATTAAGAAGCCTAATCTTAGATCAGCGGTTCCTGAATCTCCTCAAATGACAATATTCTATGCTGGAAAAATGTTGGTATTCGATGCTTTTCCTCCGGAGAAGGCAACAGAGGTGATGGAGTTGGCCACCAAGCTGGCGTTGGACAGTTCCGGCGGCGAAGAAACTCCACCGAGTGCTCCGGTTACCACCAAAGAATTGGCTGAGACCAAAGTGCCTCAGACAAACACCTCAGAAGCCCCTAAGCCAGGAAGCCAAGGGGTCGGTTCAGATATGAGGTATCCAAGAAGAGCTTCACTTCTAAAATTTCTTGAGAAAAGAAAAGAAAGGGTTAATGCGAGAGGGCCTTATCAAGTGAACAATCAGAAACCAGAGGGAAGCAGTTCAGGTGGTGATCCTGAAGATCAGTCTTCTAAACAGTTTGACCTTAACTTGTAG 702 0.4744 MSSFPNTVSEGRRFGKAPEKSSFSQTCSLLSQFLKEKRASGDSTLGMGGKMEPKASTKDLFGSLQNSDGALKLSASAMDFLPQLVENPCIKKPNLRSAVPESPQMTIFYAGKMLVFDAFPPEKATEVMELATKLALDSSGGEETPPSAPVTTKELAETKVPQTNTSEAPKPGSQGVGSDMRYPRRASLLKFLEKRKERVNARGPYQVNNQKPEGSSSGGDPEDQSSKQFDLNL 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2780g00011 233 ProSiteProfiles Tify domain profile. 98 133 IPR010399 -
Vium2780g00011 233 Pfam tify domain 100 131 IPR010399 -
Vium2780g00011 233 MobiDBLite consensus disorder prediction 1 22 - -
Vium2780g00011 233 Pfam Jas motif 184 206 IPR018467 -
Vium2780g00011 233 SMART tify_2 98 133 IPR010399 -
Vium2780g00011 233 MobiDBLite consensus disorder prediction 156 172 - -
Vium2780g00011 233 MobiDBLite consensus disorder prediction 186 201 - -
Vium2780g00011 233 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 15 216 IPR040390 -
Vium2780g00011 233 MobiDBLite consensus disorder prediction 203 233 - -
Vium2780g00011 233 MobiDBLite consensus disorder prediction 136 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2780g00011 Vium-Chr2780 105034 107484 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2780g00011 12 207 Tify Gene Family AT1G19180 36.726 6.25e-26 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vium2780g00011 tify 4.3e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2780g00011 K13464 - gmx:100778559 389.808