Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2780g00010 ATGCAGAATCATAGGCTGAAGCAGCAGCAGCAGCAACAACAACAGGCTCTGATGCAGCAAGCACTTCTCCAACAACAGTCTCTCTACCACCCTGGCCTCCTTGCTCCTCCTCAGATTGAACCAATTCCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTATGTTGGGAACATCCATACACAGGTAACTGAACCTCTTTTGCAAGAAGTTTTTGCTGGTACTGGCCCAGTTGAAGGTTGTAAACTTATCAGAAAGGAGAAGTCATCCTATGGATTTATTCATTACTTTGATCGCAGATCTGCTGCTCTTGCCATATTATCTCTTAATGGAAGGCATCTATTTGGCCAGCCTATCAAAGTTAATTGGGCATATGCCAGTGGCCAGCGAGAGGACACATCAGGTCATTACAATATTTTTGTTGGTGATCTAAGTCCTGAGGTCACTGATGCTACACTGTTTGCATGCTTTTCTGTCTACACCAGTTGTTCAGATGCAAGGGTTATGTGGGATCAGAAGACTGGGCGTTCAAGAGGATTTGGATTTGTTTCATTCCGCAGTCAACAGGATGCACAAAACGCTATAAATGATTTGACTGGTAAATGGCTTGGAAGTAGACAAATACGTTGTAACTGGGCAACTAAAGGTGCTGGTGGTATAGAAGAGANAAGAAGCCAGCTAGAAAATCTAAATCCTATTTTTGGATCATTGATATTTTAG 735 0.4313 MQNHRLKQQQQQQQQALMQQALLQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFAGTGPVEGCKLIRKEKSSYGFIHYFDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYTSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQNAINDLTGKWLGSRQIRCNWATKGAGGIEEXRSQLENLNPIFGSLIF 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2780g00010 244 CDD RRM2_PUB1 141 220 - -
Vium2780g00010 244 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 38 221 - -
Vium2780g00010 244 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 142 220 IPR000504 GO:0003723
Vium2780g00010 244 FunFam oligouridylate-binding protein 1B-like isoform X2 1 139 - -
Vium2780g00010 244 FunFam oligouridylate-binding protein 1-like isoform X2 140 234 - -
Vium2780g00010 244 SUPERFAMILY RNA-binding domain, RBD 41 135 IPR035979 GO:0003676
Vium2780g00010 244 CDD RRM1_PUB1 59 129 - -
Vium2780g00010 244 SMART rrm1_1 58 127 IPR000504 GO:0003723
Vium2780g00010 244 SMART rrm1_1 143 216 IPR000504 GO:0003723
Vium2780g00010 244 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 144 214 IPR000504 GO:0003723
Vium2780g00010 244 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 59 125 IPR000504 GO:0003723
Vium2780g00010 244 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 57 131 IPR000504 GO:0003723
Vium2780g00010 244 Gene3D - 1 137 IPR012677 -
Vium2780g00010 244 Gene3D - 138 230 IPR012677 -
Vium2780g00010 244 Coils Coil 6 26 - -
Vium2780g00010 244 SUPERFAMILY RNA-binding domain, RBD 136 229 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2780g00010 Vium-Chr2780 77828 81402 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2780g00010 131 235 Eukaryotic Initiation Factors Gene Family AT3G16380 27.619 7.98e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2780g00010 K13201 - gmx:100781227 431.024