Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2780g00008 ATGCAGAATCATAGGCTGAAGCAGCAGCAGCAGCAACAACAACAGGCTCTGATGCAGCAAGCACTTCTCCAACAACAGTCTCTCTACCACCCTGGCCTCCTTGCTCCTCCTCAGATTGAACCAATTCCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTATGTTGGGAACATCCATACACAGGTAACTGAACCTCTTTTGCAAGAAGTTTTTGCTGGTACTGGCCCAGTTGAAGGTTGTAAACTTATCAGAAAGGAGAAGTCATCCTATGGATTTATTCATTACTTTGATCGCAGATCTGCTGCTCTTGCCATATTATCTCTTAATGGAAGGCATCTATTTGGCCAGCCTATCAAAGTTAATTGGGCATATGCCAGTGGCCAGCGAGAGGACACATCAGGTCATTACAATATTTTTGTTGGTGATCTAAGTCCTGAGGTCACTGATGCTACACTGTTTGCATGCTTTTCTGTCTACACCAGTTGTTCAGATGCAAGGGTTATGTGGGATCAGAAGACTGGGCGTTCAAGAGGATTTGGATTTGTTTCATTCCGCAGTCAACAGGATGCACAAAACGCTATAAATGATTTGACTGGTAAATGGCTTGGAAGTAGACAAATACGTTGTAACTGGGCAACTAAAGGTGCTGGTGGTATAGAAGAGAAGCAAAACTCAGATGCAAAAAGTGTGGTGGAACTAACAAATGGCTCATCTGATGGTAAAGAGGTTTCTAATAGTGATGCTCCTGAGAACAATCTTCAGTATACAACGGTTTATGTGGGTAACCTTGCTTCAGAGGTAACTCAACTCGATCTCCATCGCCACTTCCATTCTCTTGGGGCTGGCGTGATAGAGGAGGTTCGTGTCCAGCGTGATAAAGGGTTTGGTTTTGTGAGGTACAGTAATCATGCTGAAGCAGCTCTGGCTATTCAGATGGGGAATGCCCAATCTCTTCTTCTTGGAAAACAAATTAAGTGCTCTTGGGGGAGCAAGCCCACTCCACCTGGAACTGCTTCAAATCCCCTTCCCCCACCTGCTGCTGCATCTCTGCCTGGGCTGTCTCCAAACGATCTTTTGGCATACGAGCGACAACTAGCCATGAGTAAGATGGGGAGCGTGCATGCTGCCTTGATGCATCCCCAAAGCCAACATTCTCTTAAACAAGCAGCGGCCATTGGAGCCAGCCAAGCAATATATGATGGTGGGTTCCAGAATGTTGCAGCTGCACAGCAAATGATGTATTACCAGTAA 1269 0.4594 MQNHRLKQQQQQQQQALMQQALLQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFAGTGPVEGCKLIRKEKSSYGFIHYFDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYTSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQNAINDLTGKWLGSRQIRCNWATKGAGGIEEKQNSDAKSVVELTNGSSDGKEVSNSDAPENNLQYTTVYVGNLASEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSNHAEAALAIQMGNAQSLLLGKQIKCSWGSKPTPPGTASNPLPPPAAASLPGLSPNDLLAYERQLAMSKMGSVHAALMHPQSQHSLKQAAAIGASQAIYDGGFQNVAAAQQMMYYQ 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2780g00008 422 FunFam oligouridylate-binding protein 1-like isoform X2 140 235 - -
Vium2780g00008 422 SUPERFAMILY RNA-binding domain, RBD 41 135 IPR035979 GO:0003676
Vium2780g00008 422 FunFam oligouridylate-binding protein 1B-like isoform X2 1 139 - -
Vium2780g00008 422 SUPERFAMILY RNA-binding domain, RBD 136 224 IPR035979 GO:0003676
Vium2780g00008 422 FunFam Oligouridylate-binding protein 1C 240 341 - -
Vium2780g00008 422 CDD RRM2_PUB1 141 220 - -
Vium2780g00008 422 Gene3D - 141 222 IPR012677 -
Vium2780g00008 422 MobiDBLite consensus disorder prediction 336 355 - -
Vium2780g00008 422 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 142 220 IPR000504 GO:0003723
Vium2780g00008 422 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 262 337 IPR000504 GO:0003723
Vium2780g00008 422 SUPERFAMILY RNA-binding domain, RBD 251 344 IPR035979 GO:0003676
Vium2780g00008 422 CDD RRM1_PUB1 59 129 - -
Vium2780g00008 422 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 43 340 - -
Vium2780g00008 422 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 57 131 IPR000504 GO:0003723
Vium2780g00008 422 Gene3D - 231 341 IPR012677 -
Vium2780g00008 422 SMART rrm1_1 58 127 IPR000504 GO:0003723
Vium2780g00008 422 SMART rrm1_1 263 333 IPR000504 GO:0003723
Vium2780g00008 422 SMART rrm1_1 143 216 IPR000504 GO:0003723
Vium2780g00008 422 Coils Coil 6 26 - -
Vium2780g00008 422 Gene3D - 1 140 IPR012677 -
Vium2780g00008 422 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 264 321 IPR000504 GO:0003723
Vium2780g00008 422 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 144 214 IPR000504 GO:0003723
Vium2780g00008 422 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 59 125 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2780g00008 Vium-Chr2780 67642 73794 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2780g00008 52 338 Eukaryotic Initiation Factors Gene Family AT4G34110 27.152 9.05e-21 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2780g00008 K13201 - gmx:100781227 762.296