Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2780g00007 TTTGCTGTTCNCATCCTTTGGGATCTTTTGACTCTTATATACCGTGCTCTTTTATTTGCAGGTCATTACAATATTTTTGTTGGTGATCTAAGTCCTGAGGTCACTGATGCTACACTGTTTGCATGCTTTTCTGTCTACACCAGTTGTTCAGATGCAAGGGTTATGTGGGATCAGAAGACTGGGCGTTCAAGAGGATTTGGATTTGTTTCATTCCGCAGTCAACAGGATGCACAAAACGCTATAAATGATTTGACTGGTAAATGGCTTGGAAGTAGACAAATACGTTGTAACTGGGCAACTAAAGGTGCTGGTGGTATAGAAGAGAAGCAAAACTCAGATGCAAAAAGTGTGGTGGAACTAACAAATGGCTCATCTGAAGATGGTAAAGAGGTTTCTAATAGTGATGCTCCTGAGAACAATCTTCAGTATACAACGGTTTATGTGGGTAACCTTGCTTCAGAGGTAACTCAACTCGATCTCCATCGCCACTTCCATTCTCTTGGGGCTGGCGTGATAGAGGAGGTTCGTGTCCAGCGTGATAAAGGGTTTGGTTTTGTGAGGTACAGTAATCATGCTGAAGCAGCTCTGGCTATTCAGATGGGGAATGCCCAATCTCTTCTTCTTGGAAAACAAATTAAGTGCTCTTGGGGGAGCAAGCCCACTCCACCTGGAACTGCTTCAAATCCCCTTCCCCCACCTGCTGCTGCATCTCTGCCTGGGCTGTCTCCAAACGATCTTTTGGCATACGAGCGACAACTAGCCATGAGTAAGATGGGGAGCGTGCATGCTGCCTTGATGCATCCCCAAAGCCAACATTCTCTTAAACAAGCAGCGGCCATTGGAGCCAGCCAAGCAATATATGATGGTGGGTTCCAGAATGTTGCAGCTGCACAGCAAATGATGTATTACCAGTAA 915 0.4536 FAVXILWDLLTLIYRALLFAGHYNIFVGDLSPEVTDATLFACFSVYTSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQNAINDLTGKWLGSRQIRCNWATKGAGGIEEKQNSDAKSVVELTNGSSEDGKEVSNSDAPENNLQYTTVYVGNLASEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSNHAEAALAIQMGNAQSLLLGKQIKCSWGSKPTPPGTASNPLPPPAAASLPGLSPNDLLAYERQLAMSKMGSVHAALMHPQSQHSLKQAAAIGASQAIYDGGFQNVAAAQQMMYYQ 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2780g00007 304 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 144 219 IPR000504 GO:0003723
Vium2780g00007 304 MobiDBLite consensus disorder prediction 115 137 - -
Vium2780g00007 304 SUPERFAMILY RNA-binding domain, RBD 21 105 IPR035979 GO:0003676
Vium2780g00007 304 CDD RRM2_PUB1 22 101 - -
Vium2780g00007 304 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 23 101 IPR000504 GO:0003723
Vium2780g00007 304 MobiDBLite consensus disorder prediction 217 238 - -
Vium2780g00007 304 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 25 95 IPR000504 GO:0003723
Vium2780g00007 304 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 146 203 IPR000504 GO:0003723
Vium2780g00007 304 SMART rrm1_1 145 215 IPR000504 GO:0003723
Vium2780g00007 304 SMART rrm1_1 24 97 IPR000504 GO:0003723
Vium2780g00007 304 Gene3D - 121 223 IPR012677 -
Vium2780g00007 304 Gene3D - 20 113 IPR012677 -
Vium2780g00007 304 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 21 222 - -
Vium2780g00007 304 MobiDBLite consensus disorder prediction 111 137 - -
Vium2780g00007 304 MobiDBLite consensus disorder prediction 224 238 - -
Vium2780g00007 304 FunFam oligouridylate-binding protein 1-like isoform X2 21 116 - -
Vium2780g00007 304 FunFam Oligouridylate-binding protein 1C 121 223 - -
Vium2780g00007 304 SUPERFAMILY RNA-binding domain, RBD 133 226 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2780g00007 Vium-Chr2780 62669 66209 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2780g00007 24 220 Eukaryotic Initiation Factors Gene Family AT4G34110 29.208 7.20e-12 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2780g00007 K13201 - gmx:100781227 517.694