Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2780g00001 ATGGCGACCAAAGATTCTCCTATGGAACTGTACGAAATCTCTACGGAATCCGATGGATCCGACTCCGGTTCCGACTGGGAGGACTCGGGAGAAGACCCCGACTACGACGCGCTTGAAGAAAGTCATAGCAAATTCTCAAACCTCTCACTTAAGCACAAGGCAAAAGCGCGCTTTATCGAGGAGAAGGGTCGAGGTGAGGAAGTGTTGGTGGTCACTGCATCTGTAAATGATGGAGAGAATTTTGGGAAAGTTCAAAAGTTAATCGAAGAGGGATTGTTGGAGAAATTGAAAGTGGATGAATGCAAGTTGTATTTGAGGAAGAATGGTCTGAGGCTAACTGGAAACAAGGACACACTTATAGAACGCATAAGGGAGCACTTGGAGATTTTAAATGGTGGGGAGAAGAAGTATCCGTCTTCTAGCTTTGTGTTTAATTGTAAAGGTGATGCATGCACTGGTGATGTAGTTTTGTTTGAGCAAAATGTCTATGAAATGTTTAACATCGCATCCAGAAGTGCTAGTGGTCCACCTTGTGGCAAAAGGATTGTTGCAGGCCGCATAGTGAAAGAAAGCTATGGTGCTGCCAAACAACAGCATACATTTACGATTGAAGTGCTCTGGAGTAAAGGAGAAAAGCCTCTCCCTCCCCTTTACCCCCTACTGATTAAGGGTCGAAACCTTTACAGGCTGAAGACTTTGAGACAGAAATGGGAAGATGAAGCAGAAAGGCAAAAAATATTGATGGAAAAACACTCAAGGGGATCTCTTGCTAGGGCAGATAGAGAAGAAAGGATTCAAGAAAAGGAGAAGAGGAAACATACCAAGGAAAATAGGGTCTCCAAAAAGGAAGCAAGGAACCAACGTCAATCAAATTCACACGTTACAAGGCCACAATATCAACCTCAAGGAACAAATGTAGTCATTAATCCAGAAAACCCTGAATTTCCATCTCGAAATTCAGTTTTATCTGTCAATATGATGAAAGAAAGATACTGTATTTTAAATAATTCAGCAGCAACTTTTGGAGGAACATCATTTGCTGTTCACAGTATGCATAGAAATCACACAAGTGACTTTAGGAATACTTTTGATATTGGTCGTGTGCGAGGAGCAGAAACTGGTGCAAACTATTATGCAGACCCCCATTTCAGAGAAAACCTCCCTAGATTTGTGAACTGCCACCCTAACATGGCTGAAATGGGCACTCATCATAGAATACCTTTGGCAAATGCAAACCATTCTCACCCATTTATGGCCCCCAATAGAGAAAGCTTTAAGATAAATCAAGTGTGCAGACATTATTCCCGTGGAAGGTGCTATTTTGGGGACAAATGCAAATTCTTACATGATCTTAGAGACAAAGGGAATGCATGA 1374 0.4199 MATKDSPMELYEISTESDGSDSGSDWEDSGEDPDYDALEESHSKFSNLSLKHKAKARFIEEKGRGEEVLVVTASVNDGENFGKVQKLIEEGLLEKLKVDECKLYLRKNGLRLTGNKDTLIERIREHLEILNGGEKKYPSSSFVFNCKGDACTGDVVLFEQNVYEMFNIASRSASGPPCGKRIVAGRIVKESYGAAKQQHTFTIEVLWSKGEKPLPPLYPLLIKGRNLYRLKTLRQKWEDEAERQKILMEKHSRGSLARADREERIQEKEKRKHTKENRVSKKEARNQRQSNSHVTRPQYQPQGTNVVINPENPEFPSRNSVLSVNMMKERYCILNNSAATFGGTSFAVHSMHRNHTSDFRNTFDIGRVRGAETGANYYADPHFRENLPRFVNCHPNMAEMGTHHRIPLANANHSHPFMAPNRESFKINQVCRHYSRGRCYFGDKCKFLHDLRDKGNA 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2780g00001 457 ProSiteProfiles Zinc finger C3H1-type profile. 425 452 IPR000571 GO:0046872
Vium2780g00001 457 Pfam SAP domain 93 127 IPR003034 -
Vium2780g00001 457 Gene3D SAP domain 80 139 IPR036361 -
Vium2780g00001 457 MobiDBLite consensus disorder prediction 21 35 - -
Vium2780g00001 457 SUPERFAMILY CCCH zinc finger 427 450 IPR036855 GO:0046872
Vium2780g00001 457 PANTHER SAP DOMAIN-CONTAINING PROTEIN 15 300 - -
Vium2780g00001 457 Gene3D - 419 456 - -
Vium2780g00001 457 MobiDBLite consensus disorder prediction 1 39 - -
Vium2780g00001 457 SUPERFAMILY SAP domain 83 128 IPR036361 -
Vium2780g00001 457 ProSiteProfiles SAP motif profile. 93 127 IPR003034 -
Vium2780g00001 457 MobiDBLite consensus disorder prediction 248 313 - -
Vium2780g00001 457 Pfam CCCH-type zinc finger 430 450 IPR041367 -
Vium2780g00001 457 SMART sap_9 93 127 IPR003034 -
Vium2780g00001 457 MobiDBLite consensus disorder prediction 248 289 - -
Vium2780g00001 457 Coils Coil 256 285 - -
Vium2780g00001 457 MobiDBLite consensus disorder prediction 290 313 - -
Vium2780g00001 457 SMART c3hfinal6 426 451 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2780g00001 Vium-Chr2780 6804 13387 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vium2780g00001 SAP 5.7e-10 CL0306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2780g00001 - - gmx:100815642 631.713