Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2778g00009 ATGAGGATCACTATTGCTTTGGATGCTTCCCGAGGAATAGAATATCTTCATAAGTATGCAGCTCCACTATTTCTTCACGGGCACGTCAAGTCTTCCAACATTCTTCTTGATGCCACTTGGCTGGCAAGAGTGTCTGATTTTAAATTGTGTTTGATGAGTCCAGAAGCTGAGCGTGATTACCGACGAATAAAGGTAGGAGGAACAGTTGGATACATTGATCCTGAGTACTATGATCTAAATACGTTGACAGCAAAGAGTGATGTGTATGGGCTGGGAGTTGTATTGCTAGAGCTTTTAACAGGAAAGAAAGCTATATTCCTTGATGGGGAAGATGAAGTTACCTTAAGTGTGCACCGTTTGGTGGACTTTGCCGTGCCTGCCATTTTGGATCCTAGGGTTGGACCACCGGGTGTGAATGAGATAGAGGCATTGGAGTTGGTGGCCCAAACAGCCCTCCATTGCGTGAATCGGAAAGGTAAAGATAGACCATCCATGGCTGATTTGTGA 507 0.4477 MRITIALDASRGIEYLHKYAAPLFLHGHVKSSNILLDATWLARVSDFKLCLMSPEAERDYRRIKVGGTVGYIDPEYYDLNTLTAKSDVYGLGVVLLELLTGKKAIFLDGEDEVTLSVHRLVDFAVPAILDPRVGPPGVNEIEALELVAQTALHCVNRKGKDRPSMADL 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2778g00009 168 Gene3D Transferase(Phosphotransferase) domain 1 1 168 - -
Vium2778g00009 168 ProSiteProfiles Protein kinase domain profile. 1 168 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2778g00009 168 Pfam Protein kinase domain 5 165 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2778g00009 168 SUPERFAMILY Protein kinase-like (PK-like) 2 168 IPR011009 -
Vium2778g00009 168 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 1 167 IPR044815 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2778g00009 Vium-Chr2778 52661 53691 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2778g00009 1 168 Receptor kinase-like Gene Family AT3G55950 60.870 8.27e-59 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Vium2778g00009 Pkinase 6.4e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2778g00009 - - vum:124831806 328.946