Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2778g00008 ATGGGTGATGCAACAAGTTTTTGGTCGGCTGTGGACAGTCCCATAAGGAGTGAGACTGCCTCAAATTTCGGAGCATCCCCTCCCCATAGTTTTGCTTCGGTGGTGGACTATGCATTGAGAAGTAGTTGTGCTTCTGAAGCAGGTTTTCGAACGTCACGTGTCTCCAGTTTTGCTTCGGGAGTGGACTATGTGATCAGGAGTAGTAGTAGTACTGGAGGAACAGATTTAGAAACCTTTCCTGTGCCTGGTTTTACTTCTGAGGTCCACTCCACCACTGTTGCTGAAGGGTCATCACCAGTGTTGTCCAACGTCACAGAACATGCTGTTAAAGGCTTACAATTATTCAGCCAGGCTGAGCTTGTAGCAGCGACCAACAATTTCTCACTCAACAACAAGATTGGTGCTGGAAGGCTTGGTGTTGTGTACATAGGCAAACTCGTTGATGGTCGTGAGGTTGCAATCAAGAGGGTTGAAACCTGGCAAAAGAAAAAGACCTCATCAATTAAATCTGCATTGACCTTCTTGTCCCGTTTACACCACAAACACTTGGTTGGGTTGGTTGGATTCTGTGAAGAGAAATACGAGAGGCTGTTGGTGTATGAGTACATGAAGAATGGTACCTTGTATGATCATTTGCATGAAAATGGTAGCAATGCGTTGAATCGGTGGAAAATGAGGATCACTATTGCTTTGGATGCTTCCCGAGGAATAGAATATCTTCATAACTATGCAGTTCCACTATTTATTCACGGGGACGTCAAGTCTTCCAACATTCTTCTTGATGCCACTTGGATGGCAAGAGTGTCTGATTTTAAATTTTCTTGGATGAGTCCAGAAGCTGAGTGTGATTACCGACGAATAAAGGTAGGAGGAACAGTTGGATACATTGATCCTGAGTACTATGATCTAAATATGTTGACAGCAAAGAGTGATGTGTATGGGCTGGGAGTTGTATTGCTAGAGCTTTTAACAGGAAAGAGAGCTATATTCCTTGATGGGGAAGATGGAGGTACCTTAAGTGTGCACCGTTTGGTGGACTTTGCAGTGCCTGCCATTTTGGCTGGAGAATTGGTCAACATTTTGGATCCTAGGGTCGGACCACCGGATGTGAATGAGATAGAGGCATTGGAGTTGGTGGCCAAAACAGCCCTACATTGTGTGAATCGGAAAGGGAAAGATAGACCATCCATGGCTGATATTGTGATCTGTTTGGAGAGAGCATTGGCCATCTGTTACGGTAGATCTTATCGTATTATTATGGGTGGATGGCTTCTCAAAAATATAGTTTGGAAATATAAGGGATATGTTAGGGATTTATAA 1320 0.4386 MGDATSFWSAVDSPIRSETASNFGASPPHSFASVVDYALRSSCASEAGFRTSRVSSFASGVDYVIRSSSSTGGTDLETFPVPGFTSEVHSTTVAEGSSPVLSNVTEHAVKGLQLFSQAELVAATNNFSLNNKIGAGRLGVVYIGKLVDGREVAIKRVETWQKKKTSSIKSALTFLSRLHHKHLVGLVGFCEEKYERLLVYEYMKNGTLYDHLHENGSNALNRWKMRITIALDASRGIEYLHNYAVPLFIHGDVKSSNILLDATWMARVSDFKFSWMSPEAECDYRRIKVGGTVGYIDPEYYDLNMLTAKSDVYGLGVVLLELLTGKRAIFLDGEDGGTLSVHRLVDFAVPAILAGELVNILDPRVGPPDVNEIEALELVAKTALHCVNRKGKDRPSMADIVICLERALAICYGRSYRIIMGGWLLKNIVWKYKGYVRDL 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2778g00008 439 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 88 413 IPR044815 GO:0004674
Vium2778g00008 439 SUPERFAMILY Protein kinase-like (PK-like) 110 404 IPR011009 -
Vium2778g00008 439 ProSiteProfiles Protein kinase domain profile. 127 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2778g00008 439 ProSitePatterns Serine/Threonine protein kinases active-site signature. 248 260 IPR008271 GO:0004672|GO:0006468
Vium2778g00008 439 Gene3D Phosphorylase Kinase; domain 1 88 202 - -
Vium2778g00008 439 Gene3D Transferase(Phosphotransferase) domain 1 203 411 - -
Vium2778g00008 439 Pfam Protein kinase domain 128 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2778g00008 439 SMART serkin_6 127 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2778g00008 Vium-Chr2778 47856 49283 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2778g00008 106 422 Receptor kinase-like Gene Family AT3G55950 62.090 9.16e-118 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Vium2778g00008 Pkinase 8.6e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2778g00008 - - vun:114193227 686.797