Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2778g00007 ATGGCTGATATCACAGTAGACGCAAGGAGTTTTAGTTGGGCAGTGGACAGTGCCATAGCGAGTGAGAGTGCGTCAGATATGGGAGAATCTCGTGTCCGCAGTTTTGCTTCGGTAGTGGACAGTGCCATAAGGAGTAGCAGTGCTACTGAAGCGGATTTTGAAACATCCCCTATCAGTTGTTTTGCTTTTGCTTCTGCGTTGACCCAAAGAATTGTTGCTGCACGACTATCACAAGCAGTGTCGGATGGGATAGGATATGTTCATACACGATTATTCACCCTAGCTGAGCTTAAAGCGGCCACCAACAATTTCTCACTTCACAACAAGATTTTTGGTGCTGGAAGCATTAGTGTTGTGCACAGAGGTAAACTCTTTGATGGTCGTGAGGTGGCTATCAAAAGGGCTGAAACCAGTTCTAAGATGAAGGAGTTTCACGAGTTATTTGGCTATTTATCCCTTTTGCCCTGCCTACACCATAATCACTTGGTTGGGCTAGTTGGGTTCTGTAAAGAGAAAGATAAAAGGTTCTTGGTCTATGAGTACATGAAGAATGGGGCGTTATATGATCATTTGCATGACAAAAACAATGTGGACAAGGAGAGCAGTGTGTTGAATTCTTGGAGAATGAGGATCAAGATTGCTTTGGATGCTTCCCGGGGAATAGAACACCTTCATAAATATGTAGTTCCAACTATTATTTACAGAGATATCAAGTCTTCCAACATTCTTCTTGATGCTAATTGGACAGCAAGAGTATCTGGTTTTGAATCGTCATGTTTCATGAGTCCAGAAGCTGAGCATGTTTTCGCGGGTATGTTTACCGCAAAGAGTGATGTGTACGGGCTTGGAGTTGTGCTGCTTGAACTTTTAACAGGAAAGAAAACTACATTCAAGTATGGGACATATAGGTGCACACGTATGGTGAACATTGCACGACATGTTATTTTGGATGGGAAAATGGTGAACATTTTGGATCCAAGGGTTGGAGCACCCCATGGAAATGAAGAAGCAGAGGCACTGGAATTAGTGGCTCATACAGCGGTCAATTGTGTAAATTTGAACAGAAAAGATAGGCCAACTATGACAGAGGTAGTGGCCAATTTGGAGACAGCTTTATCACTTGCCAATGATAACAGAAAAACAGACCATTTGCACTATTTATGA 1164 0.4261 MADITVDARSFSWAVDSAIASESASDMGESRVRSFASVVDSAIRSSSATEADFETSPISCFAFASALTQRIVAARLSQAVSDGIGYVHTRLFTLAELKAATNNFSLHNKIFGAGSISVVHRGKLFDGREVAIKRAETSSKMKEFHELFGYLSLLPCLHHNHLVGLVGFCKEKDKRFLVYEYMKNGALYDHLHDKNNVDKESSVLNSWRMRIKIALDASRGIEHLHKYVVPTIIYRDIKSSNILLDANWTARVSGFESSCFMSPEAEHVFAGMFTAKSDVYGLGVVLLELLTGKKTTFKYGTYRCTRMVNIARHVILDGKMVNILDPRVGAPHGNEEAEALELVAHTAVNCVNLNRKDRPTMTEVVANLETALSLANDNRKTDHLHYL 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2778g00007 387 Gene3D Phosphorylase Kinase; domain 1 67 181 - -
Vium2778g00007 387 SMART serkin_6 104 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2778g00007 387 SUPERFAMILY Protein kinase-like (PK-like) 84 368 IPR011009 -
Vium2778g00007 387 ProSiteProfiles Protein kinase domain profile. 105 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2778g00007 387 Pfam Protein kinase domain 109 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2778g00007 387 Gene3D Transferase(Phosphotransferase) domain 1 182 385 - -
Vium2778g00007 387 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 62 377 IPR044815 GO:0004674
Vium2778g00007 387 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2778g00007 Vium-Chr2778 45990 47469 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2778g00007 92 377 Receptor kinase-like Gene Family AT3G55950 53.605 1.19e-92 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vium2778g00007 Pkinase 7.6e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2778g00007 - - vra:106757051 715.687