Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2778g00005 ATGACATCAGCCTGGGCTCGTCCCCACTCTCATCCTTCCCCGCCGCCGCCAACCGTACTCTCGGACTCTGATTCCGACGCAGACGGCCTTTCCTCCGGCACGGAGGCACACCGCCACTCCGACCTCTCCGACTCCATATTCAAGCCATACCTCGAATTCTCCGGCCACTCCGGCGCCGACCTTTCGAAGATCCAATCATTCCTGACGTCCTCCTCCGCCGGTGCTCTCTCGTGCCTCATCTGCCTCGAACGGATCAAACCCTCGGACCCCACTTGGTCATGCTCCTCCCTCTGCTTTGCCGTCTTCCACCTCATCTGCATCCAGAGCTGGGCCCGCCAGGCATCAGACCTCGCCGCCGCACGCGCTGCCACTCGCCTCCCCATCTCCGCCGCCACGGCCTCCGACACGGCCCTCTGGAACTGCCCCAAATGCAGATCGGAGTACCCCAAATCTCTCATTCCCAAAATGTATCTCTGCTTCTGCGGGAAGGTGGAGAACCCTCCCAACGATCCGTGGGTTTTGCCACACTCTTGCGGTGAGGTTTGCGGAAGACCCTTGAAGCACAATTGCGGGCACCATTGCTTGTTACTGTGCCATCCCGGGCCGTGCCCCTCTTGCCCCAAACTCGTTAAAGTAAGATGCTTTTGCGGGTGCATTGAAGATGTTCGACGATGTGGATTCAAGGAATTTTCATGTAATAATCCGTGTTCCAAGGTTTTGGATTGTGGGGTTCACCGTTGCACCGAGGTTTGCCATCGTGGTGCTTGCCCTCCTTGCCGGACACGTGGCGTGTATGCCTGCCAGTGTGGGAAGATGAAAGAGGAGAAGGAGTGTTGTGATCGTGTTTTTCAGTGCGATCATCCGTGTGAGAAGAGGCTTAGCTGTGGGAAACATGTTTGTGAGAGAGGGTGTCATTCAGGGGAGTGTGGTGAGTGTCCCCTCAAGGGGAAGAGAACATGCCCTTGTGGGAAAAGGATTTATGAAGGAATGCCGTGTGATGCTTCTGTACAGCTTTGTGGGGCTACCTGTGATAAGATGTTGCCCTGTGGCTACCACAGGTGCCCAGAGCGGTGCCACCGTGGACAGTGCGTTGAGACTTGTAGGGTTGTTGTGAAGAAGTCCTGTCGATGCGGGAGCCTCAAGAAAGAAGTTCCTTGCTATCAAGATTTGGCATGTGAAAGGAAGTGCCAGAGGATGCGTGACTGTGGTCGGCATGCTTGCAAGCGGCGCTGCTGTGATGGGGATTGCCCTCCCTGCTCAGAGATATGCGGAAGGAGGCTTCGATGTAAGAACCATAAATGCCCTTCTCCATGCCATAGAGGTCCTTGTGCTCCTTGCCCGATAATGGTGACAATTTCATGTGCATGTGGAGAGACACGATTTGAGGTTCCTTGTGGTACGGAAATGGACCAAAAACCTCCTAGATGTCCCAAACCATGTCCTGTCACTCCTTTATGTCGACATGCATCAAATTGCAAGCCGCATAAATGCCATTATGGAGCCTGCCATCCTTGTCGGCTACCTTGTGCCAAAGAGTACCAATGTAGCCATACATGCAAATTAAGGTGTCATGGTCCTAAGCCTCCTCCTAAACCAGAGTTTACTCTGAAACCAAAGAAAAAGAAGATTATACAACAAAGTGAAGGTGTTCCTGGCACTCCATGCCCTCCTTGCCCTGAACTTGTGTGGAGATCATGTGTTGGACAACACATTGGAGCTGACAGAATGATGGTTTGCTCTGATAAATCACAGTTCTCCTGTGAAAATTTATGTGGTAATCCTCTACCATGTGGCAATCATTATTGTACAAAAACCTGCCATGCCTTGGATAGCCAATTACGAGGAAGTGAACCATGTGAAGATTGTTATCTTCGCTGCCAGAAGGAAAGAGAGCCTGCATGTCCACACAATTGCCCTCGGTCGTGCCATCCTGGAGACTGTCCTCCATGCAAGGTGCTCATTAAGCGGTCATGTCACTGTGGTGCAATGGTTCATGTGTTTGAGTGTATATATTACAATAGTTTGTCTGCAAAGGATCAAGAGACTGTCCGTTCATGTGGTGGGCCATGTCATAGAAAGTTGCCAAATTGCACGCATCTATGTCCAGAGACATGCCATCCCGGTGAGTGCACAAATGCAGAGAAATGCTGTAAAAAGGTCACAGTTCGTTGCAAATGCCAAACACTGAAAAAGGAGTGGGTTTGTCAAGATGTTCAAGCAGCGTATCATCTTATGGGTTGCCATCCAAGGGATACACCAAAAAGTCAATTTGGAATTGGACTAATTCCTTGCAATTCTGATTGTAAGAGTAAAGTGCAGGTTGTTGAGTCAGAACTACAATTGCGTAAATCTAGGGTTACTGAGGTACAAGATCAAGATGCAGAAAAATCAGTTCGAAAGCGAAGAAAAAGGAGAGAACGGGTTCTTGAATCCAAAGAAACATCAAAACTTCAGAAAATAATTTCCGGAGCGAAGCGGTTTCTTCTGTTTGTGTTTATATTGATCATTCTTGTTGCTGCTACATATTATTGCTACAAGGGACTTTTACGGCTCTCTGATTGGATGAATGAAGTGGATGAACAAAAACAAAGATATTCTCGAATCAAATGA 2610 0.4954 MTSAWARPHSHPSPPPPTVLSDSDSDADGLSSGTEAHRHSDLSDSIFKPYLEFSGHSGADLSKIQSFLTSSSAGALSCLICLERIKPSDPTWSCSSLCFAVFHLICIQSWARQASDLAAARAATRLPISAATASDTALWNCPKCRSEYPKSLIPKMYLCFCGKVENPPNDPWVLPHSCGEVCGRPLKHNCGHHCLLLCHPGPCPSCPKLVKVRCFCGCIEDVRRCGFKEFSCNNPCSKVLDCGVHRCTEVCHRGACPPCRTRGVYACQCGKMKEEKECCDRVFQCDHPCEKRLSCGKHVCERGCHSGECGECPLKGKRTCPCGKRIYEGMPCDASVQLCGATCDKMLPCGYHRCPERCHRGQCVETCRVVVKKSCRCGSLKKEVPCYQDLACERKCQRMRDCGRHACKRRCCDGDCPPCSEICGRRLRCKNHKCPSPCHRGPCAPCPIMVTISCACGETRFEVPCGTEMDQKPPRCPKPCPVTPLCRHASNCKPHKCHYGACHPCRLPCAKEYQCSHTCKLRCHGPKPPPKPEFTLKPKKKKIIQQSEGVPGTPCPPCPELVWRSCVGQHIGADRMMVCSDKSQFSCENLCGNPLPCGNHYCTKTCHALDSQLRGSEPCEDCYLRCQKEREPACPHNCPRSCHPGDCPPCKVLIKRSCHCGAMVHVFECIYYNSLSAKDQETVRSCGGPCHRKLPNCTHLCPETCHPGECTNAEKCCKKVTVRCKCQTLKKEWVCQDVQAAYHLMGCHPRDTPKSQFGIGLIPCNSDCKSKVQVVESELQLRKSRVTEVQDQDAEKSVRKRRKRRERVLESKETSKLQKIISGAKRFLLFVFILIILVAATYYCYKGLLRLSDWMNEVDEQKQRYSRIK 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2778g00005 869 MobiDBLite consensus disorder prediction 1 37 - -
Vium2778g00005 869 SUPERFAMILY RING/U-box 72 151 - -
Vium2778g00005 869 CDD NF-X1-zinc-finger 392 440 - -
Vium2778g00005 869 CDD NF-X1-zinc-finger 178 226 - -
Vium2778g00005 869 CDD NF-X1-zinc-finger 285 332 - -
Vium2778g00005 869 SMART znfxneu3 634 652 IPR000967 GO:0005634|GO:0008270
Vium2778g00005 869 SMART znfxneu3 515 560 IPR000967 GO:0005634|GO:0008270
Vium2778g00005 869 SMART znfxneu3 597 624 IPR000967 GO:0005634|GO:0008270
Vium2778g00005 869 SMART znfxneu3 349 369 IPR000967 GO:0005634|GO:0008270
Vium2778g00005 869 SMART znfxneu3 242 261 IPR000967 GO:0005634|GO:0008270
Vium2778g00005 869 SMART znfxneu3 295 314 IPR000967 GO:0005634|GO:0008270
Vium2778g00005 869 SMART znfxneu3 429 448 IPR000967 GO:0005634|GO:0008270
Vium2778g00005 869 SMART znfxneu3 190 208 IPR000967 GO:0005634|GO:0008270
Vium2778g00005 869 SMART znfxneu3 697 719 IPR000967 GO:0005634|GO:0008270
Vium2778g00005 869 SMART znfxneu3 402 421 IPR000967 GO:0005634|GO:0008270
Vium2778g00005 869 SMART znfxneu3 492 507 IPR000967 GO:0005634|GO:0008270
Vium2778g00005 869 Pfam NF-X1 type zinc finger 349 368 IPR000967 GO:0005634|GO:0008270
Vium2778g00005 869 Pfam NF-X1 type zinc finger 295 313 IPR000967 GO:0005634|GO:0008270
Vium2778g00005 869 Pfam NF-X1 type zinc finger 423 447 IPR000967 GO:0005634|GO:0008270
Vium2778g00005 869 Pfam NF-X1 type zinc finger 597 607 IPR000967 GO:0005634|GO:0008270
Vium2778g00005 869 Pfam NF-X1 type zinc finger 402 420 IPR000967 GO:0005634|GO:0008270
Vium2778g00005 869 Pfam NF-X1 type zinc finger 636 651 IPR000967 GO:0005634|GO:0008270
Vium2778g00005 869 Pfam NF-X1 type zinc finger 190 207 IPR000967 GO:0005634|GO:0008270
Vium2778g00005 869 Pfam NF-X1 type zinc finger 242 260 IPR000967 GO:0005634|GO:0008270
Vium2778g00005 869 CDD NF-X1-zinc-finger 339 388 - -
Vium2778g00005 869 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 59 524 IPR034078 GO:0003700
Vium2778g00005 869 CDD NF-X1-zinc-finger 232 280 - -
Vium2778g00005 869 CDD NF-X1-zinc-finger 419 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2778g00005 Vium-Chr2778 34148 43027 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Vium2778g00005 zf-NF-X1 0.0024 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2778g00005 K15683 - gmx:100799540 1654.8