Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2778g00001 ATGGCCTCCAGAGGAACTGGAACGCTGATTTGGGTGTGTCTGTTATGGCTTTTCTTCCTCTGCGCCACCATTGCTTTCTTTCAGCTCCACTTGGTAGACAACAGAACCAATCAACCTTCCTCTCGTGATCAGCGCTCGGATGTCCCTTTGGGACAAGATTTGGAGGGTGTCACTCACAAGGTGTATTTCGACATAGAGATCCATGGGAAATTAGCGGGTCGCATAGTAATGGGCCTTTTCGGAAACACAGTTCCGAAAACTGCAGAAAACTTTCGGGCGCTTTGTACGGGAGAGAAAGGAAAGGGAAGAAGTGGGGTGTCTCTTCATTATAAAGGAAGCACATTCCATAGGATTATACCAAGCTTTATGGTCCAGGGTGGTGATTTCACCCGTGGTGATGGAAGAGGAGGAGAATCAATCTATGGTGATAAGTTTGCTGATGAAAACTTCAAGCTGAAGCATTCTGGACCAGGATATTTATCTATGGCGAATTCTGGGCAAGACACCAATGGCTCCCAGTTTTTCATAACCACAGTTAAAACCAGCTGGCTGGATGGACGCCATGTTGTATTTGGCAAGGTACTTTCTGGTATGGACGTATTGTACAAGATTGAAGCAGAAGGAAGTGAAAGTGGCTCGCCTAAGAACAAGGTCGTCATATCAGACAGTGGAGAATTAACTTCATGA 687 0.4585 MASRGTGTLIWVCLLWLFFLCATIAFFQLHLVDNRTNQPSSRDQRSDVPLGQDLEGVTHKVYFDIEIHGKLAGRIVMGLFGNTVPKTAENFRALCTGEKGKGRSGVSLHYKGSTFHRIIPSFMVQGGDFTRGDGRGGESIYGDKFADENFKLKHSGPGYLSMANSGQDTNGSQFFITTVKTSWLDGRHVVFGKVLSGMDVLYKIEAEGSESGSPKNKVVISDSGELTS 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2778g00001 228 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 158 173 IPR002130 GO:0000413|GO:0003755
Vium2778g00001 228 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 186 201 IPR002130 GO:0000413|GO:0003755
Vium2778g00001 228 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 173 185 IPR002130 GO:0000413|GO:0003755
Vium2778g00001 228 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 79 94 IPR002130 GO:0000413|GO:0003755
Vium2778g00001 228 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 115 127 IPR002130 GO:0000413|GO:0003755
Vium2778g00001 228 SUPERFAMILY Cyclophilin-like 57 226 IPR029000 -
Vium2778g00001 228 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 63 222 IPR002130 GO:0000413|GO:0003755
Vium2778g00001 228 Gene3D - 51 228 IPR029000 -
Vium2778g00001 228 MobiDBLite consensus disorder prediction 214 228 - -
Vium2778g00001 228 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 62 225 IPR002130 GO:0000413|GO:0003755
Vium2778g00001 228 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 110 127 IPR020892 GO:0003755|GO:0006457
Vium2778g00001 228 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 60 226 - -
Vium2778g00001 228 CDD cyclophilin_ABH_like 59 224 - -
Vium2778g00001 228 MobiDBLite consensus disorder prediction 209 228 - -
Vium2778g00001 228 FunFam Peptidyl-prolyl cis-trans isomerase 55 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2778g00001 Vium-Chr2778 617 3390 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2778g00001 73 223 U-box Gene Family AT5G67530 43.791 3.00e-27 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2778g00001 K01802 - gmx:100792649 415.616