Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2776g00001 ATGCTGCATGCAGGTAAAAAAATGTGGATATGGATAACTGTTGTCTCAGTAGTAGCTGCTCTGTTAGTAATATGTGCAATTGCCCTTGTCATAAAGAAAAGAAAACGTCTGCTTCAAGAGAAAAAAAGAAAAGGGGTCGCTGAGAATAACATGGCAGATTTAGCAGCACCAAATAGATTCTTTGATGTCAAAGCCTCGGACGATGAATTCAAGATGATACAAAATCTAAACGTGTTTCACTATACATTAGTATTGTCGGCAACAGACGACTTTTCTTCTGAAAACAAATTAGGAGAAGGAGGATTTGGACCTGTTTATAAGGGAATCCTTCCTTCTGGTCAAGAAGTTGCCATAAAAAGACTTTCAAAAACATCAGGACAAGGAATTGTAGAATTCAAAAATGAACTGGTGCTTATATGTGAACTTCAGCACATGAATCTTGTACAACTACTTGGATATTGTATTTATGAAGAGGAAAGGATTCTAATTTATGAGTTCATGTCAAACAAAAGCTTGGACTGCTATTTATTTGGTGAGAATTATTTCTTAACTTAATTTTATTATGACAAAGGCAAGGTTTTGGACTGGAAGAAGCGCTTCAATATAATAGGAGGAATCTCTCAAGGATTACTCTATCTTCATAAGTACTCAAGACTAAAAGTAATTCATAGAGACTTGAAAGCTAGTAACATACTTCTTGATGAGAATATGAATCCAAAAATTTCTGATTTTGGATTGGCAAGAATGTTTACACAGGAAGAATCCATGAAAAATACTAGTAGGATTATTGGAACCTATGGTTACATGTCCCCTGAATATGCCATGGAAGGAATTTTTTCTACAAAATCTGACGTTTACAGCTTTGGAGTGTTGCTGCTTGAAATTGTTAGTGGGAGAAGAAACACTAGCTTATATGATGTTGATCTCCCTCTTAATCTTCTAGGACATGCGTGGGAGTTATGGAAAGAAGGTGCACCTCTCCAATTAGTAGATCCATCATTGAGTGAGTCATTTGATCTTGATGAAGTGAAAAGATGCATTCAAGTGGGTCTCTTATGCGTAGCACAATATGCAAATGATCGACCAACAATGTTTGATGTTGTATCAATGTTAACAAATGAAAGTTCAATAGTTACCTTGCCTCAAAAACCTGCTTTTTATTTGGAAAGAGGTTACTTTGATAAGAAAATGTCTTCTGAAGATTTAAATACTAACTCTATGGATGAAATTACTGCTTCCTTCTGA 1245 0.3526 MLHAGKKMWIWITVVSVVAALLVICAIALVIKKRKRLLQEKKRKGVAENNMADLAAPNRFFDVKASDDEFKMIQNLNVFHYTLVLSATDDFSSENKLGEGGFGPVYKGILPSGQEVAIKRLSKTSGQGIVEFKNELVLICELQHMNLVQLLGYCIYEEERILIYEFMSNKSLDCYLFGENYFLTXFYYDKGKVLDWKKRFNIIGGISQGLLYLHKYSRLKVIHRDLKASNILLDENMNPKISDFGLARMFTQEESMKNTSRIIGTYGYMSPEYAMEGIFSTKSDVYSFGVLLLEIVSGRRNTSLYDVDLPLNLLGHAWELWKEGAPLQLVDPSLSESFDLDEVKRCIQVGLLCVAQYANDRPTMFDVVSMLTNESSIVTLPQKPAFYLERGYFDKKMSSEDLNTNSMDEITASF 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2776g00001 414 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 167 379 - -
Vium2776g00001 414 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 7 400 - -
Vium2776g00001 414 FunFam Cysteine-rich receptor-like protein kinase 10 55 166 - -
Vium2776g00001 414 ProSitePatterns Serine/Threonine protein kinases active-site signature. 221 233 IPR008271 GO:0004672|GO:0006468
Vium2776g00001 414 ProSiteProfiles Protein kinase domain profile. 91 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2776g00001 414 Gene3D Transferase(Phosphotransferase) domain 1 167 381 - -
Vium2776g00001 414 CDD STKc_IRAK 97 373 - -
Vium2776g00001 414 Pfam Protein tyrosine and serine/threonine kinase 94 301 IPR001245 GO:0004672|GO:0006468
Vium2776g00001 414 SUPERFAMILY Protein kinase-like (PK-like) 74 392 IPR011009 -
Vium2776g00001 414 SMART serkin_6 91 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2776g00001 414 Gene3D Phosphorylase Kinase; domain 1 58 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2776g00001 Vium-Chr2776 1171 2908 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2776g00001 62 388 Receptor kinase-like Gene Family AT4G11530 55.488 1.12e-125 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium2776g00001 PK_Tyr_Ser-Thr 2.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2776g00001 - - vum:124831793 807.749