Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2774g00001 ATGAGTAAGATGAGGTTGATGTTATTATCATCAGGTTTGGTTTTCTTGGTGTTGCTGTTGAAGTGTGTTGGTGATACTGATAGCGATCATGCTGGAAACGTGATTACGTGGGATGATTTCATGGTGGATGAAAAGGATACAACATCCAACGTTGGTGGTCGAGTTATTGTGGTCGATCAAAATGGTAACGGAGATTCAACAACGGTTCAAGCAGCTGTAGATATGGTTCCGCAAAACAACACACAGAGGGTCAAGATATTCATTTATCCTGGAATTTATAGAGAAAGAGTGCATGTGCCGAAAAGCAAGCCGTTCATTTCATTAATAGGTAAACCTAACATAACTATGAATGCAAATATAGCGGCTATAGGTAATGGCATTGGCATAGTTATTATCACAAACAGTACAAAGGCATCAGACAAAGACTCCAACGGCCAAGAAATGGGCACAATTAGTACAGCAACTGTATGGGTACAATCTGATTTTTTCTGCGCAACAGCTCTTACAATTCAGAATTTGGTAGATAAAGAAGCAGATAAACGTCAAGCAGTAGCATTGCGTGTAGACGGTGATAAAGCTGTATTCTATGGAGTTAGGCTTGTGGGGGAGCAAGACACCCTCCTTGATAACACAGGAATCCATTATTTCTATCGAAGTTACATTCAAGGATCTGTTGATTTTATATTTGGCAATGCTAAATCGTTGTTTCATGAGTGTGTTCTATACTCTGTAGCTGAGTTTTGGGGAGCAATTGCAGCTCATCACAGAGACTCAGAAGATGAAGATACAGGATTTTCATTTGTTAATTGCACAATCAAAGGAAGTGGTAGTGTGTTTCTTGGGAGAGCATGGGGGAACTATGCAACAACAATCTATTCAAACTGTGACATGGATGATGTTATCAATCCCTTGGGATGGAGCGATTGGGGTGATCCATCAAGACAAGGGACTGCAATGTTTGGAGAGTATGAGTGTTCAGGAAAAGGATCAAACAGAAGTGAGAGGGTGGAATGGTCGAAAGCTCTAAGCAGAGAAGAAGCTGAGCCTTTTCTGAGCAGAGACTACATATATGGAGATGGATGGCTTAGACTATAG 1095 0.4082 MSKMRLMLLSSGLVFLVLLLKCVGDTDSDHAGNVITWDDFMVDEKDTTSNVGGRVIVVDQNGNGDSTTVQAAVDMVPQNNTQRVKIFIYPGIYRERVHVPKSKPFISLIGKPNITMNANIAAIGNGIGIVIITNSTKASDKDSNGQEMGTISTATVWVQSDFFCATALTIQNLVDKEADKRQAVALRVDGDKAVFYGVRLVGEQDTLLDNTGIHYFYRSYIQGSVDFIFGNAKSLFHECVLYSVAEFWGAIAAHHRDSEDEDTGFSFVNCTIKGSGSVFLGRAWGNYATTIYSNCDMDDVINPLGWSDWGDPSRQGTAMFGEYECSGKGSNRSERVEWSKALSREEAEPFLSRDYIYGDGWLRL 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2774g00001 364 ProSitePatterns Pectinesterase signature 2. 221 230 IPR033131 -
Vium2774g00001 364 FunFam Pectinesterase 51 364 - -
Vium2774g00001 364 Pfam Pectinesterase 56 359 IPR000070 GO:0030599|GO:0042545
Vium2774g00001 364 SUPERFAMILY Pectin lyase-like 53 362 IPR011050 -
Vium2774g00001 364 Gene3D - 54 364 IPR012334 -
Vium2774g00001 364 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 44 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2774g00001 Vium-Chr2774 1987 4522 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2774g00001 54 315 Carbohydrate Esterase AT5G55590 62.500 1.65e-115 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2774g00001 K01051 - gmx:100775690 599.742