Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium276g00076 ATGATGCAGCAGCCAGGACTCGGCATGGCTCCTCCCACCATGGGGCAGCAGCCACCGCAACAGTATCAGCAGCAGCCGCCGCCGCAGCAGCAACCCTACGTCATGATGCCGCCGCAGCCCCAGGCGCCTCCGCCCATGTGGGCCCCCTCCGCCCAGCCTTCGTCGCAGCAGCAGCCAGCCAGCGTTGACGAGGTCCGGACCCTGTGGATCGGCGATTTGCAGTACTGGATGGATGAAAACTATCTCTACACCTGCTTTGCACCGACCGGAGAGGTTACATCTGTCAAAGTGATTCGAAATAAGCAAACCAGTCAATCAGAAGGTTACGGGTTCATTGAATTTAACAGTCGTGCTTCAGCCGAGAGAATCCTTCAAACATATAATGGGGCTATTATGCCAAATGGGGGGCAGAGTTTCAGGTTGAATTGGGCAAGTTTTAGTGCTGGTGAAAGGCGCCATGATGATTCTCCTGATTACACAATATTTGTTGGCGACTTGGCTGCAGATGTTACTGATTACTTGCTCCAAGAGACATTTAGGGCTCGTTTCAATTCCGTGAAGGGTGCAAAAGTTGTTATTGATAGGCTAACTGGTCGGACCAAGGGTTATGGCTTTGTTAGGTTTGCGGATGAGAGTGAACAAGTGAGGGCTATGACTGAGATGCAAGGGGTTCTTTGCTCAACTAGACCCATGAGAATTGGGCCAGCCAGTAACAAAACCCCTGCTACTCAGCCGAAAGCATCATATCAGAATTCTCAAGCTCAAGGCACACAGAACGAGAATGATCCTAATAATACAACTATTTTTGTGGGCAATTTGGACGCTAATGTCAGCGATGATCATTTGAGACAAGTTTTTAGCCAGTATGGAGAATTAGTTCATGTGAAGATTCCAGCAGGCAAGCGATGCGGTTTTGTCCAATTCGCTGACAGGAACTGTGCTGAAGAGGCACTTCGGATGCTAAATGGGACACTACTGGGTGGACAAAATGTTCGTCTGTCATGGGGACGCAGTCCTTCAAACAAACAGGCTCAGGCAGATCCAAACCAGTGGAATGGAAGTGGTGGATACTATGGGTATGCACAAGGTTATGAAAACTATGGTTATGCTCCTGCTGGTCAGGATCCCAACGTGTATGGCAGTTATCCGGGGTATCCTGGTTACCAACCTCCTCAGCAACAGCAGCAAATGGGATACAGTTGA 1203 0.4971 MMQQPGLGMAPPTMGQQPPQQYQQQPPPQQQPYVMMPPQPQAPPPMWAPSAQPSSQQQPASVDEVRTLWIGDLQYWMDENYLYTCFAPTGEVTSVKVIRNKQTSQSEGYGFIEFNSRASAERILQTYNGAIMPNGGQSFRLNWASFSAGERRHDDSPDYTIFVGDLAADVTDYLLQETFRARFNSVKGAKVVIDRLTGRTKGYGFVRFADESEQVRAMTEMQGVLCSTRPMRIGPASNKTPATQPKASYQNSQAQGTQNENDPNNTTIFVGNLDANVSDDHLRQVFSQYGELVHVKIPAGKRCGFVQFADRNCAEEALRMLNGTLLGGQNVRLSWGRSPSNKQAQADPNQWNGSGGYYGYAQGYENYGYAPAGQDPNVYGSYPGYPGYQPPQQQQQMGYS 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium276g00076 400 SUPERFAMILY RNA-binding domain, RBD 29 146 IPR035979 GO:0003676
Vium276g00076 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 159 238 IPR000504 GO:0003723
Vium276g00076 400 SMART rrm1_1 67 142 IPR000504 GO:0003723
Vium276g00076 400 SMART rrm1_1 160 234 IPR000504 GO:0003723
Vium276g00076 400 SMART rrm1_1 267 334 IPR000504 GO:0003723
Vium276g00076 400 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 57 342 - -
Vium276g00076 400 FunFam Polyadenylate-binding protein RBP45C 151 242 - -
Vium276g00076 400 SUPERFAMILY RNA-binding domain, RBD 147 250 IPR035979 GO:0003676
Vium276g00076 400 FunFam Polyadenylate-binding protein RBP45 11 150 - -
Vium276g00076 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 266 338 IPR000504 GO:0003723
Vium276g00076 400 MobiDBLite consensus disorder prediction 233 267 - -
Vium276g00076 400 Gene3D - 242 347 IPR012677 -
Vium276g00076 400 FunFam Polyadenylate-binding protein RBP45C 243 371 - -
Vium276g00076 400 Gene3D - 10 152 IPR012677 -
Vium276g00076 400 MobiDBLite consensus disorder prediction 230 267 - -
Vium276g00076 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 68 133 IPR000504 GO:0003723
Vium276g00076 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 161 224 IPR000504 GO:0003723
Vium276g00076 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 268 331 IPR000504 GO:0003723
Vium276g00076 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 66 146 IPR000504 GO:0003723
Vium276g00076 400 MobiDBLite consensus disorder prediction 380 400 - -
Vium276g00076 400 SUPERFAMILY RNA-binding domain, RBD 255 363 IPR035979 GO:0003676
Vium276g00076 400 Gene3D - 158 234 IPR012677 -
Vium276g00076 400 MobiDBLite consensus disorder prediction 21 50 - -
Vium276g00076 400 CDD RRM1_SECp43_like 67 147 - -
Vium276g00076 400 CDD RRM2_SECp43_like 158 237 - -
Vium276g00076 400 MobiDBLite consensus disorder prediction 1 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium276g00076 Vium-Chr276 683165 687177 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium276g00076 65 345 Eukaryotic Initiation Factors Gene Family AT2G36660 23.529 6.44e-17 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium276g00076 - - gmx:100801562 603.594