Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium276g00075 ATGATGCAGCAGCCAGGACTCGGCATGGCTCCTCCCACCATGGGGCAGCAGCCACCGCAACAGTATCAGCAGCAGCCGCCGCCGCAGCAGCAACCCTACGTCATGATGCCGCCGCAGCCCCAGGCGCCTCCGCCCATGTGGGCCCCCTCCGCCCAGCCTTCGTCGCAGCAGCAGCCAGCCAGCGTTGACGAGGTCCGGACCCTGTGGATCGGCGATTTGCAGTACTGGATGGATGAAAACTATCTCTACACCTGCTTTGCACCGACCGGAGAGGTTACATCTGTCAAAGTGATTCGAAATAAGCAAACCAGTCAATCAGAAGGTTACGGGTTCATTGAATTTAACAGTCGTGCTTCAGCCGAGAGAATCCTTCAAACATATAATGGGGCTATTATGCCAAATGGGGGGCAGAGTTTCAGGTTGAATTGGGCAAGTTTTAGTGCTGGTGAAAGGCGCCATGATGATTCTCCTGATTACACAATATTTGTTGGCGACTTGGCTGCAGATGTTACTGATTACTTGCTCCAAGAGACATTTAGGGCTCGTTTCAATTCCGTGAAGGGTGCAAAAGTTGTTATTGATAGGCTAACTGGTCGGACCAAGGGTTATGGCTTTGTTAGGTTTGCGGATGAGAGTGAACAAGTGAGGGCTATGACTGAGATGCAAGGGGTTCTTTGCTCAACTAGACCCATGAGAATTGGGCCAGCCAGTAACAAAACCCCTGCTACTCAGCCGAAAGCATCATATCAGAATTCTCAAGCTCAAGGCACACAGAACGAGAATGATCCTAATAATACAACTATTTTTGTGGGCAATTTGGACGCTAATGTCAGCGATGATCATTTGAGACAAGTTTTTAGCCAGTATGGAGAATTAGTTCATGTGAAGATTCCAGCAGGCAAGCGATGCGGTTTTGTCCAATTCGCTGACAGGTAA 936 0.4979 MMQQPGLGMAPPTMGQQPPQQYQQQPPPQQQPYVMMPPQPQAPPPMWAPSAQPSSQQQPASVDEVRTLWIGDLQYWMDENYLYTCFAPTGEVTSVKVIRNKQTSQSEGYGFIEFNSRASAERILQTYNGAIMPNGGQSFRLNWASFSAGERRHDDSPDYTIFVGDLAADVTDYLLQETFRARFNSVKGAKVVIDRLTGRTKGYGFVRFADESEQVRAMTEMQGVLCSTRPMRIGPASNKTPATQPKASYQNSQAQGTQNENDPNNTTIFVGNLDANVSDDHLRQVFSQYGELVHVKIPAGKRCGFVQFADR 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium276g00075 311 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 159 238 IPR000504 GO:0003723
Vium276g00075 311 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 57 311 - -
Vium276g00075 311 MobiDBLite consensus disorder prediction 230 266 - -
Vium276g00075 311 SUPERFAMILY RNA-binding domain, RBD 29 146 IPR035979 GO:0003676
Vium276g00075 311 MobiDBLite consensus disorder prediction 233 266 - -
Vium276g00075 311 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 266 311 IPR000504 GO:0003723
Vium276g00075 311 FunFam Polyadenylate-binding protein RBP45C 151 243 - -
Vium276g00075 311 Gene3D - 158 234 IPR012677 -
Vium276g00075 311 Gene3D - 10 154 IPR012677 -
Vium276g00075 311 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 66 146 IPR000504 GO:0003723
Vium276g00075 311 FunFam Polyadenylate-binding protein RBP45 11 150 - -
Vium276g00075 311 SMART rrm1_1 67 142 IPR000504 GO:0003723
Vium276g00075 311 SMART rrm1_1 267 311 IPR000504 GO:0003723
Vium276g00075 311 SMART rrm1_1 160 234 IPR000504 GO:0003723
Vium276g00075 311 MobiDBLite consensus disorder prediction 21 50 - -
Vium276g00075 311 Gene3D - 242 311 IPR012677 -
Vium276g00075 311 CDD RRM1_SECp43_like 67 147 - -
Vium276g00075 311 SUPERFAMILY RNA-binding domain, RBD 156 310 IPR035979 GO:0003676
Vium276g00075 311 CDD RRM2_SECp43_like 158 237 - -
Vium276g00075 311 MobiDBLite consensus disorder prediction 1 62 - -
Vium276g00075 311 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 161 224 IPR000504 GO:0003723
Vium276g00075 311 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 268 310 IPR000504 GO:0003723
Vium276g00075 311 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 68 133 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium276g00075 Vium-Chr276 683160 686518 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium276g00075 65 309 Eukaryotic Initiation Factors Gene Family AT2G36660 25.296 1.04e-14 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium276g00075 - - gmx:100801562 496.508