Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium276g00074 ATGATGCAGCAGCCAGGACTCGGCATGGCTCCTCCCACCATGGGGCAGCAGCCACCGCAACAGTATCAGCAGCAGCCGCCGCCGCAGCAGCAACCCTACGTCATGATGCCGCCGCAGCCCCAGGCGCCTCCGCCCATGTGGGCCCCCTCCGCCCAGCCTTCGTCGCAGCAGCAGCCAGCCAGCGTTGACGAGGTCCGGACCCTGTGGATCGGCGATTTGCAGTACTGGATGGATGAAAACTATCTCTACACCTGCTTTGCACCGACCGGAGAGGTTACATCTGTCAAAGTGATTCGAAATAAGCAAACCAGTCAATCAGAAGGTTACGGGTTCATTGAATTTAACAGTCGTGCTTCAGCCGAGAGAATCCTTCAAACATATAATGGGGCTATTATGCCAAATGGGGGGCAGAGTTTCAGGTTGAATTGGGCAAGTTTTAGTGCTGGTGAAAGGCGCCATGATGATTCTCCTGATTACACAATATTTGTTGGCGACTTGGCTGCAGATGTTACTGATTACTTGCTCCAAGAGACATTTAGGGCTCGTTTCAATTCCGTGAAGGGTGCAAAAGTTGTTATTGATAGGCTAACTGGTCGGACCAAGGGTTATGGCTTTGTTAGGTTTGCGGATGAGAGTGAACAAGTGAGGGCTATGACTGAGATGCAAGGGGTTCTTTGCTCAACTAGACCCATGAGAATTGGGCCAGCCAGTAACAAAACCCCTGCTACTCAGCCGAAAGGGTGTCAAGAGGCTCTGTCATCCCGGAGCCTGGAACTGATTTCAGCTGAAATGGTTACCATTTTAGTGCATGTCCTTGCTTAG 822 0.5182 MMQQPGLGMAPPTMGQQPPQQYQQQPPPQQQPYVMMPPQPQAPPPMWAPSAQPSSQQQPASVDEVRTLWIGDLQYWMDENYLYTCFAPTGEVTSVKVIRNKQTSQSEGYGFIEFNSRASAERILQTYNGAIMPNGGQSFRLNWASFSAGERRHDDSPDYTIFVGDLAADVTDYLLQETFRARFNSVKGAKVVIDRLTGRTKGYGFVRFADESEQVRAMTEMQGVLCSTRPMRIGPASNKTPATQPKGCQEALSSRSLELISAEMVTILVHVLA 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium276g00074 273 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 159 238 IPR000504 GO:0003723
Vium276g00074 273 Gene3D - 10 155 IPR012677 -
Vium276g00074 273 Gene3D - 158 234 IPR012677 -
Vium276g00074 273 FunFam Polyadenylate-binding protein RBP45 11 150 - -
Vium276g00074 273 SMART rrm1_1 67 142 IPR000504 GO:0003723
Vium276g00074 273 SMART rrm1_1 160 234 IPR000504 GO:0003723
Vium276g00074 273 FunFam Polyadenylate-binding protein RBP45C 151 243 - -
Vium276g00074 273 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 57 244 - -
Vium276g00074 273 SUPERFAMILY RNA-binding domain, RBD 29 146 IPR035979 GO:0003676
Vium276g00074 273 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 161 224 IPR000504 GO:0003723
Vium276g00074 273 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 68 133 IPR000504 GO:0003723
Vium276g00074 273 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 66 146 IPR000504 GO:0003723
Vium276g00074 273 MobiDBLite consensus disorder prediction 21 50 - -
Vium276g00074 273 CDD RRM1_SECp43_like 67 147 - -
Vium276g00074 273 CDD RRM2_SECp43_like 158 237 - -
Vium276g00074 273 MobiDBLite consensus disorder prediction 1 62 - -
Vium276g00074 273 SUPERFAMILY RNA-binding domain, RBD 149 245 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium276g00074 Vium-Chr276 683156 684948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium276g00074 67 240 Eukaryotic Initiation Factors Gene Family AT4G34110 25.287 1.65e-14 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium276g00074 - - gmx:100801562 370.933