Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium276g00069 ATGAGTTGCTTCCCATGCTGCTGCAAATCAGACACCAAACCAACCTCTAACGGGGCAGTCTCCACCAAAGTTTCCAAAGGAAGAAGAACATTCAAATCAGTAGCTGCGGCTATGTCTCTTAAAACAGGCAGCAGCAGGAACAGGCAAATAGACGCAGAGATAAGAAAATTTGGAATTGTAAAAAATGATGTCAAAGTATTCACATATGCACAGCTTCTTGAAGCAACAGACAACTTCAGTTCTGATTGCCTGGTCGGTGAAGGTGGATTCGGGAATGTTTACAAAGGATACATGAAAAGTGTTGAACAAACTGTAGCTGTGAAGGTACTGAACAGGGACGGAGCACAAGGAACACGAGAATTTTTTGCAGAAATTTTGATGTTAAGTATGGTTCAACACCCAAACCTTGTGAGGCTCATTGGCTATTGTGCAGATGACCATTATAGGATTTTGGTTTATGAATTCCTGGCCAATGGGAGTTTGGAAAATCACCTTCTAGACATAGGTGAAGGTAAGGAGCCTTTAGATTGGAAGACCAGGATGAAAATAGCAGAGGGAGCAGCTAAAGGACTTGAATATTTGCACAGCAGTGAAGATACACCTATCATATACCGTGATTTCAAATCATCTAATATACTGTTAGATGATAACTTCAATGCAAAGCTCTCTGATTTTGGGCTGGCTAAGATTGGTCCTAAAGAAGGGATGGAGCAAGTGACAAGCAGGGTGATGGGAACTTTTGGTTATTGTGCACCAGAGTATGCTGCTAGAGGTCAACTCAGCACAAAGTCGGACATTTATAGTTTTGGGGTTGTGTTTTTGGAAATAATATCGGGTAGGAGAGTATATGACACTTCAAGAGCTACAGCAGAGCAAAACTTGATTGATTGGGCACAACCTTTGTTTAAGGACAGAACGAAGTTTACTCTAATGGCTGATCCTTTGCTTAAAGGTCAGTTCCCCGTGAAGGGTCTATTTCAATCGCTTGCAGTGGCAGCAATGTGTTTACAAGAGGAACCTGAAACACGACCTTACATGGACGATGTTGTGACGGCTCTTGCACATTTAGCAGTGCACAAAGTTGGAGACCAAGACATAGCCGGAGACTCTATAAAATGTGCAGGCCATGTTGAATCTTTCAGAGTTCTAAGCTCTGCTGGATCCGAAAGGACGTAG 1176 0.4252 MSCFPCCCKSDTKPTSNGAVSTKVSKGRRTFKSVAAAMSLKTGSSRNRQIDAEIRKFGIVKNDVKVFTYAQLLEATDNFSSDCLVGEGGFGNVYKGYMKSVEQTVAVKVLNRDGAQGTREFFAEILMLSMVQHPNLVRLIGYCADDHYRILVYEFLANGSLENHLLDIGEGKEPLDWKTRMKIAEGAAKGLEYLHSSEDTPIIYRDFKSSNILLDDNFNAKLSDFGLAKIGPKEGMEQVTSRVMGTFGYCAPEYAARGQLSTKSDIYSFGVVFLEIISGRRVYDTSRATAEQNLIDWAQPLFKDRTKFTLMADPLLKGQFPVKGLFQSLAVAAMCLQEEPETRPYMDDVVTALAHLAVHKVGDQDIAGDSIKCAGHVESFRVLSSAGSERT 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium276g00069 391 SUPERFAMILY Protein kinase-like (PK-like) 64 351 IPR011009 -
Vium276g00069 391 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 52 155 - -
Vium276g00069 391 ProSitePatterns Protein kinases ATP-binding region signature. 85 108 IPR017441 GO:0005524
Vium276g00069 391 PANTHER OS07G0668900 PROTEIN 3 362 - -
Vium276g00069 391 Gene3D Transferase(Phosphotransferase) domain 1 156 371 - -
Vium276g00069 391 CDD STKc_IRAK 85 353 - -
Vium276g00069 391 ProSiteProfiles Protein kinase domain profile. 79 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium276g00069 391 Pfam Protein kinase domain 84 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium276g00069 391 Gene3D Phosphorylase Kinase; domain 1 39 155 - -
Vium276g00069 391 ProSitePatterns Serine/Threonine protein kinases active-site signature. 202 214 IPR008271 GO:0004672|GO:0006468
Vium276g00069 391 FunFam Serine/threonine-protein kinase PBS1 156 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium276g00069 Vium-Chr276 659829 662429 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium276g00069 1 362 Glycoside Hydrolase AT3G07070 52.279 2.14e-133 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vium276g00069 Pkinase 1.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium276g00069 - - gmx:100305361 653.284