Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium276g00060 ATGGAAAACTTCACCTCTTCTTCTTCTTCTCTGTCACCTATTTCAGCTCCATCTTCTTCTGCACCTTTCGACGACTCTTTCGAAGACTCCTGCAGTATATGCCTAGAGTCCTTCACCATTCACGAACCATCTACTGTTACTAGTTGCAAACATGAATATCATCTGCATTGCATTCTTGAGTGGTCACAAAGAAGCCAAGAATGCCCAATTTGTTGGCAATCCCTTGCTTTGAAAGATCCTGCCAGCCAAGAGCTTCTAGCTGCAGTTGAAGATGAAAAACGCTTGAGATCAAGAAAGACCACTGCTTTTCGTACCCGCCTTGAACAGTATGCCTATGAGGATGACTTGTTCTCAGACGACTCTGATTCTGATGACCAGATTATGAGGCGCCTAGTTGCTGCTGCAAATAGAGCCCGTCTTGTTCAGAGACAGGAAAGGAATAGATCACCTGGTGCTGGTCCATCAGATGTTCTTGATATTAACTCTTCCATACATGTATCTGAGTTGCAAACAACACTAACAACTTCACCATCTCCGGGTAGTTTGCCTGCCTCGGGAGTAACATCTACACTTAATAGTCAACCTCCGGTATCACACACTACACCCGAAAGAGCTAGCCGACCAAACACTTATGAGATGTTTTCCTTCTCAGAATCCTTCAAATCCAAATTTTCTGCTGCTTCAACCAGATATAAGGAATCAATTTCAAAAGGTACACGGGGCCTCAAAGAGAAGTTACTTGCCCATAATGTCTCAGTAAAAGAGCTGAGTAAAGGTGTTCAGCGTGAGATGAATGCAGGCATTGCTGGAGTTGCACGGATGATTGAACGCCTTGATCTTTCAAAACGGTCCAATTCTCCTATCATTCCAATCCATAGTGAGGGAACTTCAGACTACCCAAATGAAGGGAAGAAGTATGTTGGAGAGAATGGCATTGGGGGTTCTCCAGGTAAAGAGAGTGAAGGTGCAGTTCATGATGTTAGTTCAGATGTCCCCATTGTCACTGGCGTGTAA 1014 0.4418 MENFTSSSSSLSPISAPSSSAPFDDSFEDSCSICLESFTIHEPSTVTSCKHEYHLHCILEWSQRSQECPICWQSLALKDPASQELLAAVEDEKRLRSRKTTAFRTRLEQYAYEDDLFSDDSDSDDQIMRRLVAAANRARLVQRQERNRSPGAGPSDVLDINSSIHVSELQTTLTTSPSPGSLPASGVTSTLNSQPPVSHTTPERASRPNTYEMFSFSESFKSKFSAASTRYKESISKGTRGLKEKLLAHNVSVKELSKGVQREMNAGIAGVARMIERLDLSKRSNSPIIPIHSEGTSDYPNEGKKYVGENGIGGSPGKESEGAVHDVSSDVPIVTGV 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium276g00060 337 MobiDBLite consensus disorder prediction 1 21 - -
Vium276g00060 337 ProSiteProfiles Zinc finger RING-type profile. 31 71 IPR001841 -
Vium276g00060 337 MobiDBLite consensus disorder prediction 169 209 - -
Vium276g00060 337 SUPERFAMILY RING/U-box 28 78 - -
Vium276g00060 337 MobiDBLite consensus disorder prediction 289 337 - -
Vium276g00060 337 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 20 80 - -
Vium276g00060 337 SMART ring_2 31 71 IPR001841 -
Vium276g00060 337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 139 IPR013083 -
Vium276g00060 337 Pfam Ring finger domain 29 71 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium276g00060 Vium-Chr276 567369 570263 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium276g00060 25 79 C3H Transcription Factor Family AT4G00335 45.455 4.57e-13 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium276g00060 K19043 - gmx:100805449 421.009