Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium276g00053 ATGGATGAAAACAAGCATGATCAAGCAGCAAAAGAAGGACGTGGGAAGAGCAAAGTTCAATCTGAACCCAAGGTGGAACCTCCTACCAGTCCTCCAGCTCTCACCATTGGTCCCTCTGCCTCTTCATCCAACCCACAGACAGCAAAAGAATCATTGGAGCAGCAACTCAGTAAGTTCTGGGCAAAACAGCGTCAGGAAGTTGAGGAGACCAGTGAGTCCAAGAATCACTGCTTGCCATTGGCTAGGATCAAGAGGATAATGAAGTCTGATGAGGATGTGAGAATGGTATCAGCTGAGGCTCCTGTGCTGTTGGCCAAGGCTTGTGAGATGTTCATCATGGAGCTCACAATGAGGGCATGGGGTAATGTTGAGGAGAACAAGAGGAGGACACTTAGTAAGAATGACATTGCAGCTGCAATGTCAAAGACTGACATGTATGATTTTCTTGTTGATATTGTCCCCAGAGAAGACACAAGGGGTCCTCAAGTGTTTCCAGGTATACCAGGAACACCCATTCCTCCGACTCTGTCTCAGATTCTTCCTAACTGTCCTGTGCCACCTCATAATCAACATGATGCTGCAGGTCCACAGTCTGGTGCTCCAACAATGCTCATGGGAGTGCCCCTTCTTGATCCAACTGATCCTCAGCAGCTGCAAGACCAGCCTTCTCCAACTCCAGTGTTGCCCAAACCCGAAGAAGAGAACAACCCTTCTCCTGATTCAGATGACTGA 732 0.4836 MDENKHDQAAKEGRGKSKVQSEPKVEPPTSPPALTIGPSASSSNPQTAKESLEQQLSKFWAKQRQEVEETSESKNHCLPLARIKRIMKSDEDVRMVSAEAPVLLAKACEMFIMELTMRAWGNVEENKRRTLSKNDIAAAMSKTDMYDFLVDIVPREDTRGPQVFPGIPGTPIPPTLSQILPNCPVPPHNQHDAAGPQSGAPTMLMGVPLLDPTDPQQLQDQPSPTPVLPKPEEENNPSPDSDD 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium276g00053 243 MobiDBLite consensus disorder prediction 1 21 - -
Vium276g00053 243 MobiDBLite consensus disorder prediction 183 243 - -
Vium276g00053 243 FunFam Nuclear transcription factor Y subunit gamma 43 155 - -
Vium276g00053 243 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 78 140 IPR003958 -
Vium276g00053 243 Gene3D Histone, subunit A 40 155 IPR009072 GO:0046982
Vium276g00053 243 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 48 200 - -
Vium276g00053 243 SUPERFAMILY Histone-fold 61 149 IPR009072 GO:0046982
Vium276g00053 243 MobiDBLite consensus disorder prediction 1 57 - -
Vium276g00053 243 MobiDBLite consensus disorder prediction 35 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium276g00053 Vium-Chr276 521705 522469 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium276g00053 59 208 CCAAT-HAP5 Transcription Factor Family AT1G08970 56.667 7.71e-55 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vium276g00053 CBFD_NFYB_HMF 4.8e-20 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium276g00053 K08066 - var:108342662 318.161