Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium276g00052 ATGGATCAAAACCAGCGACGTGAAGCAGGAAAAAGAATTAGTGGAGCTCCAGCACAAGCAGATGGAGGCAAGAAACAGGCAGTTGGTGTTCCTGTAGCTTCACCCTATGCTGGAGGGTATCGCTATGATCGGCAATGCATATACCAGCGGCAGCAAGAACAGTTGCAGCAACGGGTAAAAACCTTCTGGGAAAGACAGATGAAGGAAATTAAAGAGAGCAGTGATTTGAAGAACAACTTGCCTCTGTCGAGGATTAAGAAGATCATGAAGTTTGATGAAGATGTGAAGATGGTATCAAGTGAGGCTACTATGCTGTTAGGCAAGGCTTGTGAACTGTTCATAATGGAGCTCACAATGAGATCTTGGGCTCACGTGGAGGATGACAAAAGGAAGATAATTCAGAAGACTGATGTTGCATCTGCAATCTCAATGAATGATATGTTTGATTTTCTTGTTGATGTTGTTCCCAGGGATGACACTGTCCCAGTCATGGCGGGACAGCAGGTGCTTCCGGCGCCAAATCAGAATGCTCCTTACCCTTATATGTCACTTCCACCACCACCACCACCACCGTATGCTGCTCCGACAACTGCTCCTGGGAATGCTTCTTCTTCATCCGCTGCAAATCCATTCTATTTCAACTTCAATCCCACCCCAGATGAACAAGGCCCTTCCAATTCCAATCATCATTGA 693 0.4603 MDQNQRREAGKRISGAPAQADGGKKQAVGVPVASPYAGGYRYDRQCIYQRQQEQLQQRVKTFWERQMKEIKESSDLKNNLPLSRIKKIMKFDEDVKMVSSEATMLLGKACELFIMELTMRSWAHVEDDKRKIIQKTDVASAISMNDMFDFLVDVVPRDDTVPVMAGQQVLPAPNQNAPYPYMSLPPPPPPPYAAPTTAPGNASSSSAANPFYFNFNPTPDEQGPSNSNHH 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium276g00052 230 MobiDBLite consensus disorder prediction 197 230 - -
Vium276g00052 230 MobiDBLite consensus disorder prediction 1 27 - -
Vium276g00052 230 SUPERFAMILY Histone-fold 52 151 IPR009072 GO:0046982
Vium276g00052 230 MobiDBLite consensus disorder prediction 176 230 - -
Vium276g00052 230 Gene3D Histone, subunit A 42 157 IPR009072 GO:0046982
Vium276g00052 230 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 38 176 - -
Vium276g00052 230 FunFam Nuclear transcription factor Y subunit gamma 47 157 - -
Vium276g00052 230 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 79 142 IPR003958 -
Vium276g00052 230 MobiDBLite consensus disorder prediction 178 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium276g00052 Vium-Chr276 498131 498899 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium276g00052 61 226 CCAAT-HAP5 Transcription Factor Family AT1G54830 45.402 4.05e-46 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vium276g00052 CBFD_NFYB_HMF 5.5e-16 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium276g00052 K08066 - mnt:21390755 150.599