Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium276g00051 ATGGAGCAAAACCAGCATGGTCAACTAGGAAGAGGAATTGGTTCTGCTCCTGCACAAGAAGCACATAACAAGAACCAATATCAGTCCAAACCTACCAATCCTCCTATTCAGACTGCTGGTCCTTCTGTTCCTTCACCCTACCCAGGAGAGAATCACCATGCTCTCCGAAGCATGGACCGACAACAGCAACAACAGGATCAGTTGGAGGAAAAAGTGAAGAGCTTTTGGGCACAACAACTGAAGGAAATTGAGGAGAGCACTGATTTAAGGAATCAACACAGGATACCTCTGTCGAGGGTTAAGAAGATCATGAAGAGTGATGCAGATGTGAAGTTGGTTTCAGCTGAGGCTCCTGTGGTGTTTGCCAAGGCCTGTGAACTGTTCATAATGGAGCTCACAATGAAAGCTTGGGCTAACGCCGAGGACAACAATAGGAGTACAATCAAGAAGTCTGACGTTGCATCTGCAATTGCCAGGACTGATGTGTTTGATTTTCTTGAGGATATTGCCCCCATTCCTAGGGTTCACAAAAACACAATGATGCATCCATTGCTTCCAGGCAATGCTCCAACACCAACTGAGAATGTTCCTCATATGCCACCTCCTCAACATGTTGCAAGCCCACCACCACCTTATGTTGCTGCTGAAATTCCTCATGCGCTGCAAATCTATCCTCTCGTTCCAAGTTCAACTGTCCCCCCCAATCAGCAAAACCCTTCTCCTACTTCAGATGATTAA 738 0.4634 MEQNQHGQLGRGIGSAPAQEAHNKNQYQSKPTNPPIQTAGPSVPSPYPGENHHALRSMDRQQQQQDQLEEKVKSFWAQQLKEIEESTDLRNQHRIPLSRVKKIMKSDADVKLVSAEAPVVFAKACELFIMELTMKAWANAEDNNRSTIKKSDVASAIARTDVFDFLEDIAPIPRVHKNTMMHPLLPGNAPTPTENVPHMPPPQHVASPPPPYVAAEIPHALQIYPLVPSSTVPPNQQNPSPTSDD 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium276g00051 245 MobiDBLite consensus disorder prediction 53 67 - -
Vium276g00051 245 MobiDBLite consensus disorder prediction 226 245 - -
Vium276g00051 245 MobiDBLite consensus disorder prediction 186 207 - -
Vium276g00051 245 Gene3D Histone, subunit A 56 172 IPR009072 GO:0046982
Vium276g00051 245 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 58 176 - -
Vium276g00051 245 MobiDBLite consensus disorder prediction 19 36 - -
Vium276g00051 245 MobiDBLite consensus disorder prediction 193 207 - -
Vium276g00051 245 MobiDBLite consensus disorder prediction 1 71 - -
Vium276g00051 245 FunFam Nuclear transcription factor Y subunit gamma 58 173 - -
Vium276g00051 245 SUPERFAMILY Histone-fold 46 166 IPR009072 GO:0046982
Vium276g00051 245 Coils Coil 51 71 - -
Vium276g00051 245 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 94 157 IPR003958 -
Vium276g00051 245 MobiDBLite consensus disorder prediction 228 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium276g00051 Vium-Chr276 483997 484734 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium276g00051 72 171 CCAAT-HAP5 Transcription Factor Family AT1G56170 61.000 3.09e-44 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vium276g00051 CBFD_NFYB_HMF 1.3e-16 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium276g00051 K08066 - gmx:100807580 201.06