Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium276g00046 ATGTCTCACATAGCTGTCGAGAGGAACCGAAGAAGACAGATGAATGAACATCTCAAAGTTTTAAGATCGTTGACTCCTTGTTTCTATATCAAAAGGGGAGATCAAGCATCTATAATAGGCGGTGTCATAGAATTCATCAAGGAGTTACACCAAGTTCTTCAGGCTTTGGAATCCCAGAAAAGAAGAAAGAGTTTAAGCCCTAGCCCAGGTCCGAGTCCACGAACACTTCAGCCAAATTTTCATCAACTTGATAGCTCCTCCATAATTGGGCCCAATTCTTTCAAGGAACTGGGAGCAAGCTGCAACTCTTCTGTTGCGGACGTTGAAGTGAAAATCTCTGGTTCAAATGTGATCTTGAAAGTGATCTCCCAAAGAATTCCGGGTCAAGTTGCAAGGATCGTAACTGTTTTGGAAAGTCTTTCCTTTGAAGTTCTTCATCTGAACATCAGCAGCATGGAGGAGACTGTCCTTTACCAGTTTGTGGTCAAGATAGAACTGGGATGTCAACTGAGTCTGGAGGAACTGGCAATGGAAGTGCAACAAAGCTTCTGCTCAGNCTTGATCCTTGATCCTTGA 576 0.4323 MSHIAVERNRRRQMNEHLKVLRSLTPCFYIKRGDQASIIGGVIEFIKELHQVLQALESQKRRKSLSPSPGPSPRTLQPNFHQLDSSSIIGPNSFKELGASCNSSVADVEVKISGSNVILKVISQRIPGQVARIVTVLESLSFEVLHLNISSMEETVLYQFVVKIELGCQLSLEELAMEVQQSFCSXLILDP 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium276g00046 191 Gene3D - 1 64 IPR036638 GO:0046983
Vium276g00046 191 SMART finulus 4 55 IPR011598 GO:0046983
Vium276g00046 191 FunFam Transcription factor MUTE 1 66 - -
Vium276g00046 191 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 49 IPR011598 GO:0046983
Vium276g00046 191 ProSiteProfiles ACT domain profile. 118 191 IPR002912 -
Vium276g00046 191 PANTHER TRANSCRIPTION FACTOR FAMA 1 183 IPR044283 GO:0003700|GO:0010052
Vium276g00046 191 Pfam Helix-loop-helix DNA-binding domain 2 49 IPR011598 GO:0046983
Vium276g00046 191 MobiDBLite consensus disorder prediction 60 81 - -
Vium276g00046 191 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 68 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium276g00046 Vium-Chr276 394570 396259 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium276g00046 1 185 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G06120 65.816 6.13e-85 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium276g00046 HLH 4.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium276g00046 - - gmx:100810771 343.584