Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium276g00043 ATGAAAAGTAAAAAGGGAAAGTGGAAAACTATAGAAATCCGTGGAAAGAACAAAGAACACAAAAGGTTGGTTCAACATAATTTCCCGCACAACACGCGTTCGTTCCATTGGGAGCTCTGTTTCATCATCATCATCTCACTGCTTCTGATTCTGAATTCAACCACTCTCATGGGTATCTCATGGAGTAGCAGAAGAAGAAACAATTACATCCAAAACACACCGCCTCCACTCCCACCTCCCCTTTACTATTACCGTCCCCAATTCAACCACCCTCCTCCTCAGCTGCCACCGCAGGGCTACTTTCAACCTTCCACAACCACTTACTCCCCCCACAACAACAACAACTATGCTGCTCCCCCTCCCTTGGTTCCACCGCCACAGACGCCACAGCCGCCACCGCCGCCGCAGACTCATTCCATCTCCTTCTATCACCCCAACCAGAGTGCCTATACCAACTACGCCAATTCCGCGCCCAATCGCCATCACTACCCACCTTCATACCACTCTCAGCCTACCCTGTTGCCGGCCGCCACTCGCGCCTCTGCCTCCACTCCTCCACCCTATGTCGATCACCAGACTGCGAAGAAGATACGAAACTATGTTAACGTCCACAAAGACACCCTGCGCCTCGAGGTTGACCAGGAAAACCCCGATCATCATCTCATTTCCTTCGTTTTCGATGCTGTCTACGATGGCAGCATTACTGTCTCCTACTTTGCCAAAGAAGAAGAAAAATGTAGGTTTGTTCCATTATTTCCTGATGCATTTCAGCCAGTCACAATACCCTTTCAGAAAGGAGCCGGCCAGACATTTTCCCAGCCTTCGGGAACAGGAATTGACCTAGGCTTCTTTGAGTTGGATGATCTTTCAAAGTCCTCACCTGGAGAAGATGTGTTTCCTCTAGTAATATGTGCCGAAACAAGTTTGAAAACACCCTCGGAAGATGAAACTCCGGGTGATTCTGTTGTAGATACATCACCTCACATGCAAATAACTCAAGGTGTCTTGGAGAAAAGTAATGGTGCTGGTTCTTTCCATATAAAAGTGGTAAGGCAGATTTTGTGGATTGATGGTGTTAGATATGAGTTGAGAGAGTTATATGGAATAGCAAGCTCACCTGCAGCTGATTTTGACGACAATGATCCCGGGAAGGAGTGTGTCATATGCATGACTGAACCAAAGGATACAGCTGTCTTACCTTGTCGACATATGTGTATGTGCGGTGACTGTGCAAAAGATTTGCGACTTCAATCCAATAAATGCCCTATATGCCGTCAGCCTATCGAGGAACTTATACAGATCAAAGTAAACAATGACAATCAATGA 1326 0.4683 MKSKKGKWKTIEIRGKNKEHKRLVQHNFPHNTRSFHWELCFIIIISLLLILNSTTLMGISWSSRRRNNYIQNTPPPLPPPLYYYRPQFNHPPPQLPPQGYFQPSTTTYSPHNNNNYAAPPPLVPPPQTPQPPPPPQTHSISFYHPNQSAYTNYANSAPNRHHYPPSYHSQPTLLPAATRASASTPPPYVDHQTAKKIRNYVNVHKDTLRLEVDQENPDHHLISFVFDAVYDGSITVSYFAKEEEKCRFVPLFPDAFQPVTIPFQKGAGQTFSQPSGTGIDLGFFELDDLSKSSPGEDVFPLVICAETSLKTPSEDETPGDSVVDTSPHMQITQGVLEKSNGAGSFHIKVVRQILWIDGVRYELRELYGIASSPAADFDDNDPGKECVICMTEPKDTAVLPCRHMCMCGDCAKDLRLQSNKCPICRQPIEELIQIKVNNDNQ 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium276g00043 441 MobiDBLite consensus disorder prediction 117 139 - -
Vium276g00043 441 CDD mRING-HC-C3HC5_MGRN1-like 384 425 IPR045195 -
Vium276g00043 441 SUPERFAMILY RING/U-box 378 431 - -
Vium276g00043 441 ProSiteProfiles Zinc finger RING-type profile. 386 425 IPR001841 -
Vium276g00043 441 FunFam probable E3 ubiquitin-protein ligase LOG2 370 435 - -
Vium276g00043 441 MobiDBLite consensus disorder prediction 100 116 - -
Vium276g00043 441 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 372 435 IPR013083 -
Vium276g00043 441 SMART ring_2 386 424 IPR001841 -
Vium276g00043 441 Pfam Zinc finger, C3HC4 type (RING finger) 384 430 - -
Vium276g00043 441 MobiDBLite consensus disorder prediction 93 143 - -
Vium276g00043 441 PANTHER MAHOGUNIN 101 437 IPR045194 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium276g00043 Vium-Chr276 350062 354123 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium276g00043 188 441 C3H Transcription Factor Family AT3G06140 61.961 3.44e-108 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium276g00043 - - vra:106775674 788.489